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eatRep log file (check_x86_64_linux)

Sat Sep 23 20:06:45 2017: Checking package eatRep (SVN revision 739) ...
* using log directory ‘/mnt/building/build_2017-09-23-20-04/RF_PKG_CHECK/PKGS/eatRep.Rcheck’
* using R version 3.4.2 RC (2017-09-21 r73332)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘eatRep/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘eatRep’ version ‘0.8.19’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Sebastian Weirich ’

New submission

The Title field is just the package name: provide a real title.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘eatRep’ can be installed ... [8s/8s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/18s] NOTE
conv.mean : : no visible global function definition for
  ‘na.omit’
conv.mean :  : : no visible global function
  definition for ‘flush.console’
conv.quantile : : no visible binding for global variable
  ‘sd’
conv.table : : no visible global function definition for
  ‘chisq.test’
dG: no visible global function definition for ‘pt’
desk : : no visible global function definition for ‘var’
desk : : no visible global function definition for ‘na.omit’
desk : : no visible global function definition for ‘sd’
desk : : no visible global function definition for ‘t.test’
desk : : no visible global function definition for ‘median’
eatRep: no visible global function definition for ‘flush.console’
eatRep : doIt: no visible binding for global variable ‘txt’
eatRep: no visible global function definition for ‘makeCluster’
eatRep: no visible global function definition for ‘clusterApply’
eatRep: no visible global function definition for ‘stopCluster’
eatRep: no visible global function definition for ‘as.formula’
eatRep: no visible binding for global variable ‘resG’
eatRep :  : : no visible global function
  definition for ‘flush.console’
getOutputIfSingular: no visible global function definition for
  ‘na.omit’
getOutputIfSingular: no visible global function definition for ‘coef’
getOutputIfSingular: no visible global function definition for ‘var’
getOutputIfSingularT1: no visible global function definition for
  ‘na.omit’
getOutputIfSingularT1: no visible global function definition for ‘coef’
getOutputIfSingularT1: no visible global function definition for ‘sd’
getOutputIfSingularT1: no visible global function definition for ‘var’
jackknife.glm: no visible global function definition for
  ‘flush.console’
jackknife.glm : : no visible global function definition for
  ‘glm’
jackknife.glm : : no visible binding for global variable
  ‘glm.family’
jackknife.glm : : no visible global function definition for
  ‘var’
jackknife.glm : : no visible global function definition for
  ‘capture.output’
jackknife.glm : : no visible global function definition for
  ‘flush.console’
jackknife.mean: no visible global function definition for
  ‘flush.console’
jackknife.mean : : no visible binding for global variable
  ‘res’
jackknife.mean : : no visible global function definition for
  ‘as.formula’
jackknife.mean : : no visible global function definition for
  ‘coef’
jackknife.mean : : no visible global function definition for
  ‘vcov’
jackknife.mean :  : : no visible global function
  definition for ‘flush.console’
jackknife.quantile: no visible global function definition for
  ‘flush.console’
jackknife.quantile: no visible global function definition for
  ‘as.formula’
jackknife.table: no visible global function definition for
  ‘flush.console’
jackknife.table: no visible global function definition for ‘as.formula’
jackknife.table : : no visible global function definition
  for ‘as.formula’
jk2.glm: no visible binding for global variable ‘gaussian’
jk2.table: no visible global function definition for ‘as.formula’
jk2.table: no visible global function definition for ‘model.matrix’
pool.corr: no visible global function definition for ‘pnorm’
pool.corr: no visible global function definition for ‘qnorm’
Undefined global functions or variables:
  as.formula capture.output chisq.test clusterApply coef flush.console
  gaussian glm glm.family makeCluster median model.matrix na.omit pnorm
  pt qnorm res resG sd stopCluster t.test txt var vcov
Consider adding
  importFrom("stats", "as.formula", "chisq.test", "coef", "gaussian",
             "glm", "median", "model.matrix", "na.omit", "pnorm", "pt",
             "qnorm", "sd", "t.test", "var", "vcov")
  importFrom("utils", "capture.output", "flush.console")
to your NAMESPACE file.
* checking Rd files ... NOTE
prepare_Rd: compareTrends.Rd:17-19: Dropping empty section \details
prepare_Rd: compareTrends.Rd:34-36: Dropping empty section \note
prepare_Rd: compareTrends.Rd:28-30: Dropping empty section \references
prepare_Rd: compareTrends.Rd:40-42: Dropping empty section \seealso
prepare_Rd: dG.Rd:23-25: Dropping empty section \details
prepare_Rd: dG.Rd:40-42: Dropping empty section \note
prepare_Rd: dG.Rd:34-36: Dropping empty section \references
prepare_Rd: dG.Rd:46-48: Dropping empty section \seealso
prepare_Rd: dM.Rd:24-26: Dropping empty section \details
prepare_Rd: dM.Rd:41-43: Dropping empty section \note
prepare_Rd: dM.Rd:35-37: Dropping empty section \references
prepare_Rd: dM.Rd:47-49: Dropping empty section \seealso
prepare_Rd: dQ.Rd:19-21: Dropping empty section \details
prepare_Rd: dQ.Rd:36-38: Dropping empty section \note
prepare_Rd: dQ.Rd:30-32: Dropping empty section \references
prepare_Rd: dQ.Rd:42-44: Dropping empty section \seealso
prepare_Rd: dT.Rd:32-34: Dropping empty section \details
prepare_Rd: dT.Rd:49-51: Dropping empty section \note
prepare_Rd: dT.Rd:43-45: Dropping empty section \references
prepare_Rd: dT.Rd:55-57: Dropping empty section \seealso
prepare_Rd: jk2.glm.Rd:145-147: Dropping empty section \note
prepare_Rd: jk2.glm.Rd:139-141: Dropping empty section \references
prepare_Rd: jk2.glm.Rd:151-153: Dropping empty section \seealso
prepare_Rd: jk2.mean.Rd:132-134: Dropping empty section \note
prepare_Rd: jk2.mean.Rd:126-128: Dropping empty section \references
prepare_Rd: jk2.mean.Rd:138-140: Dropping empty section \seealso
prepare_Rd: jk2.quantile.Rd:147-149: Dropping empty section \note
prepare_Rd: jk2.quantile.Rd:141-143: Dropping empty section \references
prepare_Rd: jk2.quantile.Rd:151-153: Dropping empty section \seealso
prepare_Rd: jk2.table.Rd:159-161: Dropping empty section \note
prepare_Rd: jk2.table.Rd:165-167: Dropping empty section \seealso
prepare_Rd: eatRep-package.rd:113-114: Dropping empty section \seealso
prepare_Rd: eatRep-package.rd:115-116: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'jk2.mean.Rd':
  \usage lines wider than 90 characters:
               repWgt = NULL, nest=NULL, imp=NULL, groups = NULL, group.splits = length(groups),
                 group.differences.by = NULL, group.delimiter = "_", trend = NULL, linkErr = NULL, 
  \examples lines wider than 100 characters:
                     group.differences.by=c("wholePop", "sex"), dependent = "score", na.rm=FALSE, doCheck=TRUE)

Rd file 'jk2.quantile.Rd':
  \usage lines wider than 90 characters:
     jk2.quantile(datL, ID, wgt = NULL, type = c("JK1", "JK2", "BRR"), PSU = NULL, repInd = NULL, 
                 repWgt = NULL, nest=NULL, imp=NULL, groups = NULL, group.splits = length(groups),

Rd file 'jk2.table.Rd':
  \usage lines wider than 90 characters:
               repWgt = NULL, nest=NULL, imp=NULL, groups = NULL, group.splits = length(groups), 
               group.differences.by = NULL, chiSquare = FALSE, correct = TRUE, group.delimiter = "_", 
               trend = NULL, linkErr = NULL, dependent, separate.missing.indicator = FALSE, na.rm=FALSE, 

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [145s/145s] NOTE
Examples with CPU or elapsed time > 5s
               user system elapsed
jk2.mean     64.132  0.928  65.103
jk2.table    41.300  0.284  41.587
jk2.glm      22.348  0.152  22.504
jk2.quantile 11.832  0.088  11.922
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [84s/84s] OK
* checking PDF version of manual ... OK
* DONE

Status: 6 NOTEs
See
  ‘/mnt/building/build_2017-09-23-20-04/RF_PKG_CHECK/PKGS/eatRep.Rcheck/00check.log’
for details.


Run time: 332.49 seconds.

Additional Logs:   00install.out
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge