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PFIM log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2012-04-03-01-52/RF_PKG_CHECK/PKGS1/PFIM.Rcheck'
* using R version 2.15.0 Patched (2012-04-09 r58947)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'PFIM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PFIM' version '0.1.5'
* checking CRAN incoming feasibility ... NOTE
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'PFIM' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    Examples   4.6Mb
    libs       1.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
readMatElem: warning in matrix(c(r1, scan(con, double(), n = Fd * (Fd -
  1L), quiet = TRUE)), nc = Fd, byrow = TRUE): partial argument match
  of 'nc' to 'ncol'
readPFIM: no visible binding for global variable 'file.model'
readPFIM: no visible binding for global variable 'covariate.model'
readPFIM: no visible binding for global variable 'covariate_occ.model'
readPFIM: no visible binding for global variable 'n_occ'
readPFIM: no visible binding for global variable 'run'
readPFIM: no visible binding for global variable 'option'
readPFIM: no visible binding for global variable 'nr'
readPFIM: no visible binding for global variable 'names.datay'
readPFIM: no visible binding for global variable 'modelform'
readPFIM: no visible binding for global variable 'dose'
readPFIM: no visible binding for global variable 'condinit'
readPFIM: no visible binding for global variable 'form'
readPFIM: no visible binding for global variable 'formED'
readPFIM: no visible binding for global variable 'parameters'
readPFIM: no visible binding for global variable 'omega'
readPFIM: no visible binding for global variable 'Trand'
readPFIM: no visible binding for global variable 'names.datax'
sensitivity.PFIMmodDE: no visible global function definition for
  'sensJac'
solve.PFIMmodAE: no visible global function definition for
  'model.sensNum'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... NONE
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'AE1.R'
  Running 'AEfun2.R'
  Running 'AEfun3.R'
  Running 'matelem.R'
 OK
** running tests for arch 'x64'
  Running 'AE1.R'
  Running 'AEfun2.R'
  Running 'AEfun3.R'
  Running 'matelem.R'
 OK
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  'R:/run/building/build_2012-04-03-01-52/RF_PKG_CHECK/PKGS1/PFIM.Rcheck/00check.log'
for details.

Run time: 77.5 seconds.