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SpatialEpiR log file (build_win64)
Tue Feb 19 10:26:42 2013: Building binary for package SpatialEpiR (SVN revision 1026)
using R version 2.15.2 Patched (2013-01-31 r61797) ...
* installing to library 'R:/lib/local/2.15'
* installing *source* package 'SpatialEpiR' ...
** libs
*** arch - i386
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c allofree.c -o allofree.o
gfortran -m32 -O3 -mtune=core2 -c cncvwt.f -o cncvwt.o
gfortran -m32 -O3 -mtune=core2 -c cvker2d.f -o cvker2d.o
gfortran -m32 -O3 -mtune=core2 -c edhatk.f -o edhatk.o
edhatk.f:30.17:
do p=1,k-1
1
Warning: Deleted feature: Loop variable at (1) must be integer
edhatk.f:63.17:
do p=1,k-1
1
Warning: Deleted feature: Loop variable at (1) must be integer
gfortran -m32 -O3 -mtune=core2 -c imp.f -o imp.o
gfortran -m32 -O3 -mtune=core2 -c ipippa.f -o ipippa.o
gfortran -m32 -O3 -mtune=core2 -c iplace.f -o iplace.o
gfortran -m32 -O3 -mtune=core2 -c kdesr10.f -o kdesr10.o
gfortran -m32 -O3 -mtune=core2 -c kdesr2.f -o kdesr2.o
gfortran -m32 -O3 -mtune=core2 -c kdesr3.f -o kdesr3.o
gfortran -m32 -O3 -mtune=core2 -c kdesr5.f -o kdesr5.o
gfortran -m32 -O3 -mtune=core2 -c kdesr6.f -o kdesr6.o
gfortran -m32 -O3 -mtune=core2 -c kdesr7.f -o kdesr7.o
gfortran -m32 -O3 -mtune=core2 -c kdesr8.f -o kdesr8.o
gfortran -m32 -O3 -mtune=core2 -c kdesr9.f -o kdesr9.o
gfortran -m32 -O3 -mtune=core2 -c ker2d.f -o ker2d.o
gfortran -m32 -O3 -mtune=core2 -c ker2dg.f -o ker2dg.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c keredgecor.c -o keredgecor.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c matfunc.c -o matfunc.o
matfunc.c:165:13: warning: 'matinsert' defined but not used [-Wunused-function]
matfunc.c:177:13: warning: 'vecinsert' defined but not used [-Wunused-function]
matfunc.c:205:13: warning: 'matdmult' defined but not used [-Wunused-function]
matfunc.c:223:13: warning: 'matvecmult' defined but not used [-Wunused-function]
matfunc.c:256:13: warning: 'mattransdmult' defined but not used [-Wunused-function]
matfunc.c:274:13: warning: 'mat2transdmult' defined but not used [-Wunused-function]
matfunc.c:292:13: warning: 'mattransdvecmult' defined but not used [-Wunused-function]
matfunc.c:308:13: warning: 'vecadd' defined but not used [-Wunused-function]
matfunc.c:318:13: warning: 'vecsub' defined but not used [-Wunused-function]
matfunc.c: In function 'ludcmp':
matfunc.c:16:12: warning: 'imax' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c newt.c -o newt.o
newt.c: In function 'lnsrch':
newt.c:101:27: warning: 'fold2' may be used uninitialized in this function [-Wuninitialized]
newt.c:101:27: warning: 'f2' may be used uninitialized in this function [-Wuninitialized]
newt.c:103:22: warning: 'alam2' may be used uninitialized in this function [-Wuninitialized]
gfortran -m32 -O3 -mtune=core2 -c plarea.f -o plarea.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c randomgen.c -o randomgen.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rands.c -o rands.o
rands.c:4:1: warning: return type defaults to 'int' [enabled by default]
rands.c:10:1: warning: return type defaults to 'int' [enabled by default]
rands.c:16:1: warning: return type defaults to 'int' [enabled by default]
rands.c: In function 'dranget_':
rands.c:20:1: warning: control reaches end of non-void function [-Wreturn-type]
rands.c: In function 'ranstop_':
rands.c:14:1: warning: control reaches end of non-void function [-Wreturn-type]
rands.c: In function 'ranstart_':
rands.c:8:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c smaccalc.c -o smaccalc.o
smaccalc.c: In function 'calcbetas':
smaccalc.c:1010:19: warning: unused variable 'check' [-Wunused-variable]
smaccalc.c: In function 'mcmc':
smaccalc.c:1233:23: warning: unused variable 'temp' [-Wunused-variable]
smaccalc.c: At top level:
smaccalc.c:439:15: warning: 'likfunc2' defined but not used [-Wunused-function]
smaccalc.c:577:15: warning: 'mlogL' defined but not used [-Wunused-function]
smaccalc.c: In function 'estimate':
smaccalc.c:794:26: warning: 'oldb' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:811:25: warning: 'b' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c: In function 'mcmc':
smaccalc.c:974:18: warning: 'select' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:907:27: note: 'select' was declared here
smaccalc.c: In function 'betamcmc':
smaccalc.c:1089:18: warning: 'select' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1010:27: note: 'select' was declared here
smaccalc.c:1344:33: warning: 'vartemp' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1341:25: warning: 'meantemp' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1345:33: warning: 'sumtemp' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1286:23: warning: 'bhatvarmat' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1286:12: warning: 'bhatmat' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1079:35: warning: 'd2inv' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1014:22: note: 'd2inv' was declared here
smaccalc.c:1101:14: warning: 'd2logL' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1014:12: note: 'd2logL' was declared here
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c smaccsample.c -o smaccsample.o
gfortran -m32 -O3 -mtune=core2 -c sort2.f -o sort2.o
gfortran -m32 -O3 -mtune=core2 -c var2.f -o var2.o
gfortran -m32 -O3 -mtune=core2 -c var3.f -o var3.o
gfortran -m32 -O3 -mtune=core2 -c weight.f -o weight.o
gcc -m32 -shared -s -static-libgcc -o SpatialEpiR.dll tmp.def allofree.o cncvwt.o cvker2d.o edhatk.o imp.o ipippa.o iplace.o kdesr10.o kdesr2.o kdesr3.o kdesr5.o kdesr6.o kdesr7.o kdesr8.o kdesr9.o ker2d.o ker2dg.o keredgecor.o matfunc.o newt.o plarea.o randomgen.o rands.o smaccalc.o smaccsample.o sort2.o var2.o var3.o weight.o -LR:/base/local215/lib/i386 -LR:/base/local215/lib -lgfortran -LR:/lib/R/R-patched/bin/i386 -lR
installing to R:/lib/local/2.15/SpatialEpiR/libs/i386
*** arch - x64
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c allofree.c -o allofree.o
gfortran -m64 -O2 -mtune=core2 -c cncvwt.f -o cncvwt.o
gfortran -m64 -O2 -mtune=core2 -c cvker2d.f -o cvker2d.o
gfortran -m64 -O2 -mtune=core2 -c edhatk.f -o edhatk.o
edhatk.f:30.17:
do p=1,k-1
1
Warning: Deleted feature: Loop variable at (1) must be integer
edhatk.f:63.17:
do p=1,k-1
1
Warning: Deleted feature: Loop variable at (1) must be integer
gfortran -m64 -O2 -mtune=core2 -c imp.f -o imp.o
gfortran -m64 -O2 -mtune=core2 -c ipippa.f -o ipippa.o
gfortran -m64 -O2 -mtune=core2 -c iplace.f -o iplace.o
gfortran -m64 -O2 -mtune=core2 -c kdesr10.f -o kdesr10.o
gfortran -m64 -O2 -mtune=core2 -c kdesr2.f -o kdesr2.o
gfortran -m64 -O2 -mtune=core2 -c kdesr3.f -o kdesr3.o
gfortran -m64 -O2 -mtune=core2 -c kdesr5.f -o kdesr5.o
gfortran -m64 -O2 -mtune=core2 -c kdesr6.f -o kdesr6.o
gfortran -m64 -O2 -mtune=core2 -c kdesr7.f -o kdesr7.o
gfortran -m64 -O2 -mtune=core2 -c kdesr8.f -o kdesr8.o
gfortran -m64 -O2 -mtune=core2 -c kdesr9.f -o kdesr9.o
gfortran -m64 -O2 -mtune=core2 -c ker2d.f -o ker2d.o
gfortran -m64 -O2 -mtune=core2 -c ker2dg.f -o ker2dg.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c keredgecor.c -o keredgecor.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c matfunc.c -o matfunc.o
matfunc.c:165:13: warning: 'matinsert' defined but not used [-Wunused-function]
matfunc.c:177:13: warning: 'vecinsert' defined but not used [-Wunused-function]
matfunc.c:205:13: warning: 'matdmult' defined but not used [-Wunused-function]
matfunc.c:223:13: warning: 'matvecmult' defined but not used [-Wunused-function]
matfunc.c:256:13: warning: 'mattransdmult' defined but not used [-Wunused-function]
matfunc.c:274:13: warning: 'mat2transdmult' defined but not used [-Wunused-function]
matfunc.c:292:13: warning: 'mattransdvecmult' defined but not used [-Wunused-function]
matfunc.c:308:13: warning: 'vecadd' defined but not used [-Wunused-function]
matfunc.c:318:13: warning: 'vecsub' defined but not used [-Wunused-function]
matfunc.c: In function 'ludcmp':
matfunc.c:53:12: warning: 'imax' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c newt.c -o newt.o
newt.c: In function 'lnsrch':
newt.c:101:27: warning: 'fold2' may be used uninitialized in this function [-Wuninitialized]
newt.c:101:27: warning: 'f2' may be used uninitialized in this function [-Wuninitialized]
newt.c:103:22: warning: 'alam2' may be used uninitialized in this function [-Wuninitialized]
gfortran -m64 -O2 -mtune=core2 -c plarea.f -o plarea.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c randomgen.c -o randomgen.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rands.c -o rands.o
rands.c:4:1: warning: return type defaults to 'int' [enabled by default]
rands.c:10:1: warning: return type defaults to 'int' [enabled by default]
rands.c:16:1: warning: return type defaults to 'int' [enabled by default]
rands.c: In function 'dranget_':
rands.c:20:1: warning: control reaches end of non-void function [-Wreturn-type]
rands.c: In function 'ranstop_':
rands.c:14:1: warning: control reaches end of non-void function [-Wreturn-type]
rands.c: In function 'ranstart_':
rands.c:8:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c smaccalc.c -o smaccalc.o
smaccalc.c: In function 'calcbetas':
smaccalc.c:1010:19: warning: unused variable 'check' [-Wunused-variable]
smaccalc.c: In function 'mcmc':
smaccalc.c:1233:23: warning: unused variable 'temp' [-Wunused-variable]
smaccalc.c: At top level:
smaccalc.c:439:15: warning: 'likfunc2' defined but not used [-Wunused-function]
smaccalc.c:577:15: warning: 'mlogL' defined but not used [-Wunused-function]
smaccalc.c: In function 'estimate':
smaccalc.c:794:26: warning: 'oldb' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:811:25: warning: 'b' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c: In function 'mcmc':
smaccalc.c:974:18: warning: 'select' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:907:27: note: 'select' was declared here
smaccalc.c: In function 'betamcmc':
smaccalc.c:1089:18: warning: 'select' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1010:27: note: 'select' was declared here
smaccalc.c:1344:33: warning: 'vartemp' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1341:25: warning: 'meantemp' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1345:33: warning: 'sumtemp' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1286:23: warning: 'bhatvarmat' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1286:12: warning: 'bhatmat' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1079:35: warning: 'd2inv' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1014:22: note: 'd2inv' was declared here
smaccalc.c:1101:14: warning: 'd2logL' may be used uninitialized in this function [-Wuninitialized]
smaccalc.c:1014:12: note: 'd2logL' was declared here
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c smaccsample.c -o smaccsample.o
gfortran -m64 -O2 -mtune=core2 -c sort2.f -o sort2.o
gfortran -m64 -O2 -mtune=core2 -c var2.f -o var2.o
gfortran -m64 -O2 -mtune=core2 -c var3.f -o var3.o
gfortran -m64 -O2 -mtune=core2 -c weight.f -o weight.o
gcc -m64 -shared -s -static-libgcc -o SpatialEpiR.dll tmp.def allofree.o cncvwt.o cvker2d.o edhatk.o imp.o ipippa.o iplace.o kdesr10.o kdesr2.o kdesr3.o kdesr5.o kdesr6.o kdesr7.o kdesr8.o kdesr9.o ker2d.o ker2dg.o keredgecor.o matfunc.o newt.o plarea.o randomgen.o rands.o smaccalc.o smaccsample.o sort2.o var2.o var3.o weight.o -LR:/base/local215/lib/x64 -LR:/base/local215/lib -lgfortran -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/2.15/SpatialEpiR/libs/x64
** R
** inst
** preparing package for lazy loading
** help
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:41: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:42: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:43: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:44: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:45: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:46: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:49: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:51: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:52: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:53: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:55: unknown macro '\item'
Warning: R:/tmp/RtmpAT7WCD/R.INSTALL10c2e3470d3/SpatialEpiR/man/siggam.Rd:56: unknown macro '\item'
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
running .First.lib() for package 'SpatialEpiR' as .onLoad/.onAttach were not found
SPatialEpiR alpha-test version
*** arch - x64
running .First.lib() for package 'SpatialEpiR' as .onLoad/.onAttach were not found
SPatialEpiR alpha-test version
* MD5 sums
packaged installation of 'SpatialEpiR' as SpatialEpiR_0.0.1.zip
* DONE (SpatialEpiR)
Run time: 14.94 seconds.
