[#2525] export.merlin not identical with old/new parameter

Date:
2013-02-02 09:14 Priority:
4

State:
Closed

Submitted by:
Yurii Aulchenko (yurii) Assigned to:
Nobody (None)

Resolution:
Fixed Operating System:
None

Severity:
major Hardware:
None

Version:
None Component:
GenABEL

URL:

Summary:
export.merlin not identical with old/new parameter

Detailed description
Originally the problem was reported at http://forum.genabel.org/viewtopic.php?f=6&t=743 The following test shows that using option dpieceFun= old/new produces different resuts: in R, run library(GenABEL) data(srdta) export.merlin(srdta[,1:2],dpieceFun="new") export.merlin(srdta[,1:2],dpieceFun="old",mapfile="me.map",pedfile="me.ped",datafile="me.dat") then diff merlin.ped me.ped shows problems with sex coding (and this starts from 100+ id!)

Comments:

Message
Date: 2013-04-04 11:44 Sender: Yurii Aulchenko fixed in version 1.7-5 (patch submitted by Vladimir Naumov)

Field	Old Value	Date	By
status_id	Open	2013-04-04 11:44	yurii
close_date	None	2013-04-04 11:44	yurii
Resolution	None	2013-04-04 11:44	yurii