Date:
2018-06-27 17:20 |
Priority:
3 |
State:
Closed |
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Submitted by:
Matt Thornton (mthornton)
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Assigned to:
Martin Maechler (mmaechler)
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Hardware:
PC |
Product:
None |
Operating System:
Linux |
Component:
None |
Version:
None |
Severity:
major |
Resolution:
None |
|
URL:
|
Summary:
I can confirm the is_redescender bug |
| Detailed description |
Hello
> install.packages("robustbase")
Installing package into ‘/home/met/.R_Libs/site-library’
(as ‘lib’ is unspecified)
trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/robustbase_0.93-1.tar.gz'
Content type 'application/x-gzip' length 2957641 bytes (2.8 MB)
==================================================
downloaded 2.8 MB
* installing *source* package ‘robustbase’ ...
** package ‘robustbase’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I"/opt/maths/R/R-3.5.0/home/include" -DNDEBUG -I/usr/local/include -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c R-rng4ftn.c -o R-rng4ftn.o
gfortran -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c eigen.f -o eigen.o
gcc -std=gnu99 -I"/opt/maths/R/R-3.5.0/home/include" -DNDEBUG -I/usr/local/include -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c init.c -o init.o
gcc -std=gnu99 -I"/opt/maths/R/R-3.5.0/home/include" -DNDEBUG -I/usr/local/include -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c lmrob.c -o lmrob.o
gcc -std=gnu99 -I"/opt/maths/R/R-3.5.0/home/include" -DNDEBUG -I/usr/local/include -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c mc.c -o mc.o
gcc -std=gnu99 -I"/opt/maths/R/R-3.5.0/home/include" -DNDEBUG -I/usr/local/include -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c monitor.c -o monitor.o
gcc -std=gnu99 -I"/opt/maths/R/R-3.5.0/home/include" -DNDEBUG -I/usr/local/include -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c qn_sn.c -o qn_sn.o
gfortran -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c rf-common.f -o rf-common.o
gfortran -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c rffastmcd.f -o rffastmcd.o
gfortran -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c rfltsreg.f -o rfltsreg.o
gfortran -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c rllarsbi.f -o rllarsbi.o
gcc -std=gnu99 -I"/opt/maths/R/R-3.5.0/home/include" -DNDEBUG -I/usr/local/include -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c rob-utils.c -o rob-utils.o
gcc -std=gnu99 -I"/opt/maths/R/R-3.5.0/home/include" -DNDEBUG -I/usr/local/include -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c rowMedians.c -o rowMedians.o
gcc -std=gnu99 -I"/opt/maths/R/R-3.5.0/home/include" -DNDEBUG -I/usr/local/include -fpic -m64 -march=athlon-fx -mtune=athlon-fx -mavx -g -pipe -fopenmp -fPIC -c wgt_himed.c -o wgt_himed.o
gcc -std=gnu99 -shared -L/opt/maths/R/R-3.5.0/home/lib -L/usr/local/lib64 -o robustbase.so R-rng4ftn.o eigen.o init.o lmrob.o mc.o monitor.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o rllarsbi.o rob-utils.o rowMedians.o wgt_himed.o -L/opt/maths/R/R-3.5.0/home/lib -lRlapack -L/opt/maths/OpenBLAS2/OpenBLAS-0.2.14/build/lib -lopenblas_bulldozerp-r0.2.14 -lgfortran -lm -lgomp -lquadmath -lpthread -lgfortran -lm -lgomp -lquadmath -lpthread -L/opt/maths/R/R-3.5.0/home/lib -lR
installing to /home/met/.R_Libs/site-library/robustbase/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function from function ‘chgDefaults’ in package ‘robustbase’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error: package or namespace load failed for ‘robustbase’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/met/.R_Libs/site-library/robustbase/libs/robustbase.so':
/home/met/.R_Libs/site-library/robustbase/libs/robustbase.so: undefined symbol: is_redescender
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/met/.R_Libs/site-library/robustbase’
The downloaded source packages are in
‘/data/met/tmp/RtmpH3v9Fv/downloaded_packages’
Warning message:
In install.packages("robustbase") :
installation of package ‘robustbase’ had non-zero exit status
Maybe an older dependency??
Thanks |
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