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      Genetics
          Phylogenetics
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11 projects in result set.
1. ecoPD - ecoPD: Ecologically-informed phylodiversity metrics in R
 
Activity Percentile: 71.00
Activity Ranking: 30.00
Register Date: 2009-10-15 20:33

2. Analysis of Independent Contrasts - The CAIC package provides methods for the comparative analysis of taxa using independent contrasts methods. It reimplements the methods of the CAIC and MacroCAIC programs will implement alternative methods such as those provided in LDAP.
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2008-01-31 16:29

3. phylobase - Defining the basic S4 classes and methods for representing and manipulating phylogenetic trees and data in R.
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2007-12-14 20:17

4. SPecies' LImits by Threshold Statistics - splits contains tools for delimiting species and automated taxonomy at many levels of biological organization (eg. DNA barcoding, morphometrics), top-down (merging phylogenetic and phylogeographic methods) and bottom-up (single samples into >1 groups).
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2009-01-15 15:06

5. adephylo - The package 'adephylo' implements multivariate approaches for comparative data, i.e. data including one phylogeny and one or several traits.
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2008-11-18 16:35

6. picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2008-01-16 23:15

7. Continuous Character Transitions - maticce: Mapping Transitions In Continuous Character Evolution This project provides tools for an information-theoretic approach to estimating the probability of continuous character transitions on phylogenetic trees.
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2008-11-07 20:39

8. paleoPhylo - 'paleoPhylo' will contain tools to assess how speciation, extinction & character change contribute to biodiversity. Currently it features graphical tools to draw phylogenies with time axes and ancestors that persist after speciation.
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2008-10-07 14:38

9. Phylogenetic Analysis Helper - Helper functions and methods for phylogenetic comparative methods packages phylobase, ape, ouch, geiger and ade4.
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2008-08-01 07:30

10. TreEvo - TreEvo (TREE + EVOlution) is an assortment of methods for understanding evolution using trees. It aims to be compatible and complementary with the wide assortment of existing packages in this area in R.
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2008-07-23 23:21

11. Paleontological time-series - This package facilitates analysis of paleontological sequences of trait values. Functions are provided to fit, using maximum likelihood, evolutionary models including unbiased random walks, directional evolution, stasis and adaptive models.
 
Activity Percentile: 0.00
Activity Ranking: 0.00
Register Date: 2007-12-18 17:28

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