Software Map
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7 projects in result set.
| Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations | |
| Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate | |
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Activity Percentile: 0 Activity Ranking: 0 Registered: 2011-02-02 00:51 |
| DiscreteMTP Package - Procedures to adjust P-values in multiple testing where the test statistics are discrete distributed. The procedures exploit the discreteness to get a larger number of rejected tests while controlling the same FDR level. | |
| Tags: Multiple Comparisons, Bioinformatics, DNA, false discovery rate, microarray | |
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Activity Percentile: 0 Activity Ranking: 0 Registered: 2012-04-03 11:32 |
| Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association. | |
| Tags: Bioinformatics, categorical, data mining, dependence, dissimilarity, entropy, gene expression, genetics, independence, microarray | |
| This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0 Activity Ranking: 0 Registered: 2012-08-10 08:48 |
| neaGUI - NeaGUI is a user friendly package developed to implement a method of network enrichment analysis (NEA) that extends the overlap statistics in GEA to network links between genes in the experimental set and those in the functional categories. | |
| Tags: network enrichment analysis, microarray, gene expression | |
| This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0 Activity Ranking: 0 Registered: 2012-03-29 19:40 |
| pathview - Pathview is a novel tool set in for pathway based data integration and visualization. It downloads the pathway graph data, parses the data file, maps and integrates user data onto the pathway, and renders pathway graph with the mapped data. | |
| Tags: Bioinformatics, Visualization, gene expression, microarray | |
| This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0 Activity Ranking: 0 Registered: 2013-03-07 22:20 |
| pi0 estimators - Estimation of the proportion of true null hypotheses (pi0) from a large number of hypothesis tests; Non/parametric recovery of noncentrality parameter distribution; False discovary rates (FDR) computation. | |
| Tags: Multiple Comparisons, dissimilarity, distance, high dimentional data, microarray, multidimensional scaling, multiplicity, permutation tests, semiparametric model, spline, variable selection | |
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Activity Percentile: 93 Activity Ranking: 9 Registered: 2010-03-21 02:01 |
| plumbCNV: [under construction] - It has been shown that a comprehensive quality control battery for Log-R-Ratio intensity data is needed to reduce the high false positive rate for rare CNV detection [Shtir et al, 2013]. PlumbCNV is an R package that automates this QC pipeline. | |
| Tags: CNV, CNP, SNP, QC, plumbCNV, PCA, bigmemory, bigalgebra, plink, penncnv, R, Copy number variant, microarray, illumina, affy | |
| This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0 Activity Ranking: 0 Registered: 2013-02-07 14:22 |
