Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models survival teaching text mining time series visualization
17 projects in result set.
A cookbook of epidemiological models  This package aims to provide a large, diverse set of mathematical models developed in R, including both deterministic and stochastic models, and approaches to parameter estimation.  
Tags: epidemiology, IBM, ODE, differential equations, dynamic systems, individualbased models, simulation  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130508 13:59 
Early Warning Signals Toolbox  The EarlyWarningSignals Toolbox provides to the general practitioner available methods for estimating statistical changes in timeseries that can be used for the intime identification of critical transitions.  
Tags: resilience, leading indicators, regime shifts, critical transitions, fold bifurcation, autocorrelation, variance, skewness, catastrophic shifts, hysteresis, R, RForge, dynamic systems, ecology, nonparametrics, nonlinear equations, spatial autocorrelation, spatial data, spatial methods, time series, tipping points, wavelet  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20111220 21:58 
Iterated Function Systems  Iterated Function Systems  IFS estimator  
Tags: density estimation, distributions, dynamic systems, estimation  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150821 21:39 
Multivariate Functional Regression  Estimation of functional regression with multiple functionnal regressors and optimal selection of the smoothing parameters and the number of basis. It also includes the treatment of strictly positive functional data.  
Tags: dynamic systems, multivariate, nonparametric, semiparametric model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20160610 21:14 
ODE Solvers Compiled OnDemand  The odeintr package generates compiled ODE solvers ondemand. It uses the Boost odeint library and Rcpp.  
Tags: C++, Ecology, Economics, Fast, Fisheries, Forestry, HPC, ODE, R, Rcpp, dynamic systems, ecological models, ordinary differential equations, simulation, solver  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150506 21:14 
R functions for functional data analysis  The ‘fda’ package includes functions and data sets for functional data analysis as described in Ramsay, J. O. and Silverman, B. W. (2005) Functional Data Analysis (Springer) and (2002), Applied Functional Data Analysis (Springer).  
Tags: fda, nonparametric, differential equations, dynamic systems, multivariate, semiparametric model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080118 03:15 
RNetLogo  RNetLogo is an interface to the agentbased modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.  
Tags: agentbased Model, Animal, Artificial Neural Network, Ecology, Economics, Fisheries, R, dynamic systems, individualbased models, individualbasedmodel, political analysis, population dynamics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110819 15:59 
Simulation of stochastic kinetic models  This package was developed for the book chapter in "In silico Systems Biology: A systemsbased approach to understanding biological processes" published by Humana Press. This book is part of the Methods in Molecular Biology series.  
Tags: dynamic systems  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121002 08:40 
SoilR  The objective of this project is the development of an R package for modeling soil organic matter decomposition. The package contains a collection of different functions commonly used to represent soil organic matter dynamics.  
Tags: Ecology, ODE, dynamic systems, ecological models, ecology, simulation, soil  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120117 15:38 
Spatial dynamic modeling  spdynamic is a framework to implement spatiallyexplicit dynamic simulation models. This package provides easy to use functions to organize scenarios of spatial dynamic simulations as well as read, visualize and access spatiotemporal data in the models.  
Tags: dynamic systems, ecological models, spatial, spatiotemporal  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20111125 08:45 
Yuima Project  The project for simulation and inference of multidimensional stochastic differential equations.  
Tags: finance, stochastic processes, stochastic differential equation, estimation, time series, model selection, change point, Bayesian, Finance, MCMC, Monte Carlo, Statistics, change detection, changepoint, dynamic systems, inference, likelihood, option, option pricing, simulation, simulations, statistical inference, statistics, stochastic, stochastic differential equations  

Activity Percentile: 3 Activity Ranking: 38 Registered: 20090928 11:24 
deSolve: Differential Equation Solvers  deSolve is a collection of solvers, mostly from the 'lsode' family of solvers. deSolve provides R interfaces to solvers for stiff and nonstiff systems, and can take system descriptions in R, or as defined in dynamically loaded compiled code.  
Tags: ODE, differential equations, dynamic systems, ecological models, economic, finance, solver  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080326 19:38 
is2  Inference methods using iterated smoothing for partiallyobserved Markov processes  
Tags: Statistics, dynamic systems, inference, likelihood, stochastic differential equations, time series  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150407 21:34 
qualV  Qualitative Validation Criteria  Package qualV provides quantitative and qualitative criteria to compare models with data and to measure similarity of patterns. Specific attention is payed to problems with systematic differences and time shifts.  
Tags: model comparison, dynamic systems  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080228 15:45 
simecol  Ecological Models with R  simecol allows to implement ecological models (ODEs, IBMs, ...) using a templatelike objectoriented stucture. It helps to organize scenarios and may also be useful for other areas.  
Tags: dynamic systems, differential equations, individualbased models, ODE, IBM, ecology, simulation, ecological models  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080220 20:34 
surveillance  The Rpackage 'surveillance' is a framework for the development of statistical methods for the modeling and changepoint detection in time series of counts, proportions and categorical data as well as continuoustime epidemic like point process phenomena.  
Tags: Ecology, autocorrelation, biostatistics, break detection, categorical, change detection, disease mapping, dynamic systems, ecology, event histories, model specification, regression, spatial, spatial data, spatial methods, spatiotemporal, spatiotemporal point patterns  

Activity Percentile: 29 Activity Ranking: 28 Registered: 20070619 14:46 