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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

25 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-02 00:51

Chain graph models in R - Software for fitting (block recursive) chain graphs in R.
Tags: Graphical model, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, Variables Selection, data mining, machine learning, markov, model estimation, multivariate, multivariate regression, multivariate statistics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-06-26 07:16

Classification rules - An R package for learning classification rules from data.
Tags: data mining, classification, rule induction, rule learning, rule quality measures

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-04-10 12:11

CoModes - CoModes focuses on the categorical data clustering. The function CoModescluster performs the model selection and the maximum likelihood estimation. CoModes also contains tools functions.
Tags: Clustering, Gibbs sampling, Mixture, Multivariate Analysis, clustering, data mining, mixture model
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-12-20 08:35

DHclus - Divisive hierarchical clustering algorithm with automatic determination of components
Tags: R, clustering, data mining

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-08-31 12:26

Dynamic Time Warp - Comprehensive implementation of Dynamic Time Warping algorithms in R. Supports arbitrary local (eg symmetric, asymmetric, slope-limited) and global (windowing) constraints, fast native code, several plot styles, and more.
Tags: data mining, time series, dynamic programming

Activity Percentile: 0
Activity Ranking: 0
Registered: 2007-11-29 18:01

Evolutionary Biology in R - Active development of this and my other package has been migrated to github http://coleoguy.github.io/software.html
Tags: Bioinformatics, Genetics, Phylogeny, Regression, data mining, education, educational tool, genetics, genomic, phylogeny, population genetics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2013-10-11 20:03

Fast Regularized Canonical Correlation - This R package implements the Fast Regularized Canonical Correlation method.
Tags: Bioinformatics, data mining, high dimentional data, regularization
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-09-10 18:11

Fast- and Frugal Trees [early alpha!] - A package for the analysis of Fast- and Frugal trees, simple classification trees with a simplistic structure. Create FF-trees manually, or via induction through bruteforce/chasing/monte carlo. ATTENTION : PRE-ALPHA STAGE.
Tags: Fast, Frugal, Tree, Classification, Fit, Clustering, R, classification, data mining, model evaluation
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2014-10-07 10:23

Finding word alignment using IBM model 1 - For a given Sentence-Aligned Parallel Corpus, this package aligns words in every sentence pair. Further, it builds a suggested dictionary of two languages based on given corpus.
Tags: alignment, Machine Learning, NLP, linguistics, data mining

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-11-15 06:43

MODISTools - MODISTools uses the MODIS SOAP Web Service provided by ORNL DAAC for remote retrieval and processing of large subsets of data -- as a batch process -- from NASAs online archive of remotely-sensed data from the MODIS satellites.
Tags: Ecology, data mining, remote sensing

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-08-09 23:53

MixCluster - MixCluster performs the cluster analysis of mixed-type data by using a mixture model of Gaussian copulas. Thus, the intra-class dependencies are modelized and the one-dimensional margins of the components follow classical distributions.
Tags: Bayesian, Clustering, Estimation, Gibbs sampling, Machine Learning, Machine learning, Mixture, Multivariate Analysis, PCA, Visualisation, Visualization, clustering, copula, data mining, density estimation, mixed model, mixture, mixture model, mixture modelling, model estimation
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-08-11 14:03

Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
Tags: Bioinformatics, categorical, data mining, dependence, dissimilarity, entropy, gene expression, genetics, independence, microarray

Activity Percentile: 0
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Registered: 2012-08-10 08:48

Probabilistic Suffix Trees - The PST library allows to fit and visualize Probabilistic Suffix Trees (PST), the construction that stores Variable Length Markov Chains (VLMC). Fitted PSTs can be used to predict, generate or impute categorical sequences.
Tags: R, data mining, sequence analysis, probabilistic suffix trees, variable length markov chains

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-01-04 10:50

RDataMining - a package for data mining - A comprehensive R Package for Data Mining, with contributions from many R users. If you have developed or will implement any data mining algorithms in R, please participate in this project to make your work available to R users worldwide.
Tags: data mining

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-06-06 05:19

STOPS - Methods that fit nonlinear distance transformations in multidimensional scaling and trade-off the fit with structure considerations to find optimal parameters.
Tags: Clustering, Multidimensional Scaling, Multivariate Analysis, Multivariate Techniques, data mining, multidimensional scaling, multivariate, multivariate statistics

Activity Percentile: 38
Activity Ranking: 33
Registered: 2015-02-12 00:09

Sequence analysis for social scientists - TraMineR is intended for mining and visualizing sequences of states or events. Its primary aim is the analysis of longitudinal data in the social science field but many of its features may also apply to non temporal data such as text or DNA sequences.
Tags: event histories, sequence, sequence analysis, state sequence, event sequence, trajectory, visualization, dissimilarity, distance, discrepancy, optimal matching, representative sequence, ANOVA, tree, frequent patterns, data mining, longitudinal data

Activity Percentile: 73
Activity Ranking: 15
Registered: 2010-04-13 10:26

Subgroup Discovery and Analytics - The rsubgroup package provides algorithms and tools for subgroup discovery and analytics for the free R environment. The package integrates an interface to the org.vikamine.kernel library of the VIKAMINE system (http://www.vikamine.org).
Tags: subgroup discovery, pattern mining, analytics, data mining, machine learning

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-05-04 15:02

Super Biclustering - An R package for checking the overlapping parts in bicluster output. The variety of biclustering methods are considered for the representability of discovered biclusters. It is an add-on for existing biclustering packages.
Tags: biclustering, biclustering diagnostics, overlapping biclustering, data mining
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-09-17 12:12

arules - Mining Association Rules - Infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules). arules is now maintained on Github: https://github.com/mhahsler/arules
Tags: data mining, frequent patterns, association rules, visualization, classification

Activity Percentile: 0
Activity Ranking: 0
Registered: 2007-05-21 13:55

25 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
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