Software Map

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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

18 projects in result set.
Analysis of phenological digital imagery - The package phenopix provides functions to process digital images of a vegetation cover, depict greennes index trajectories and extract relevant phenological stages.
Tags: image analysis, community ecology, logistic, Filter, phenology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-09-23 08:50

ComInd - Community assembly testing in particular using individuals traits values.
Tags: community ecology, ecology, traits, indiduals, niche, null model, species pool

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-03-04 10:10

CommEcol - Analyses in Community Ecology - CommEcol - Data Analyses in Community Ecology
Tags: Ecology, beta diversity, community ecology, community null model, dissimilarity, distance, diversity, diversity partioninig, ecology, environmetrics, functional diversity, nestedness, phylogeny

Activity Percentile: 61
Activity Ranking: 18
Registered: 2013-04-25 23:41

EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
Tags: Abundance, Bioinformatics, Bioinformatics & Biostatistics, Count estimates, Ecological monitoring, Ecology, Environmental monitoring, Metagenomic, biodiversity, biodiversity estimation, bioenv, community ecology, diversity, species accumulation, species distributions

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-10-08 19:20

NullSens - Partitioning Abiotic and Biotic Contributions to Community Variation
Tags: Ecology, Multivariate Analysis, Multivariate Regression, bioinformatics, community ecology, community null model, ecological Inference, ecological models, ecology, linear models, model estimation, model performance, molecular ecology, multivariate regression, nonparametric, null model, parametric model, permutation tests, prediction, regression, robust statistics, simulations, spatial regression, spatio-temporal statistics, species abundance model, species distributions, statistical inference, variance partitioning
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-05 19:49

Species Abundance Distributions - Tools to fit and compare models of species abundance distribution using likelihood-based methods
Tags: community ecology, diversity, ecology, species abundance model, Ecology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-01-24 12:50

Species Distribution Modelling - sdm is an extendable framework to develop species distributions models using individual and community-based approaches, generate ensembles of models, evaluate the models, and predict species potential distributions in space and time.
Tags: Bioinformatics, Biostatistics, Ecology, Machine Learning, animal, community ecology, ensemble forecasting, raster, spatial, spatial data, spatial methods, species distribution models, species distributions

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-26 16:09

bat - Biodiversity Assessment Tools - An R package useful for biodiversity assessment, including: - Taxon, phylogenetic and functional dimensions of alpha and beta diversity - Accumulation curves for all measures - Diversity estimation from incomplete sampling - Beta diversity partition
Tags: beta diversity, community ecology, dissimilarity, diversity, diversity partitioning, ecology, extrapolated richness, functional diversity, species accumulation, taxonomic diversity, phylogenetic diversity, biodiversity estimation

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-14 11:14

betapart: partitioning beta diversity - This project aims to build a R package for computing pair-wise dissimilarities and multiple-site dissimilarities separating the turnover and nestedness components of beta diversity
Tags: beta diversity, community ecology, dissimilarity, diversity partioninig, nestedness

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-07-27 16:36

cati - Community Assembly by Trait: Individuals and beyond
Tags: community ecology, ecology, traits, indiduals, niche, null model, species pool

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-03-05 11:27

cusp - Package for applying Cobb's maximum likelihood method to fitting cusp catastrophe models to data. The package was published in the Journal of Statistical Software [see www.jstatsoft.org/v32/i08/paper].
Tags: cusp bifurcation, Ecology, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, R, Regression, biostatistics, community ecology, fold bifurcation, hysteresis, model estimation, multivariate, multivariate regression, multivariate statistics, nonlinear equations, nonlinear models, political analysis, political science, psychology, psychometrics, regression, catastrophic shifts, critical transitions, dynamic systems, ecology, regime shifts

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-10-29 16:43

general multiple-table data management - Our objective is to develop classes of objects that (1) make handling multiple-table data sets easier and (2) seamlessly integrate with existing R plotting and model-fitting functions; our philosophy is to keep data management and data analysis separate.
Tags: Ecology, community ecology, database, ecology, high dimentional data

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-07-27 02:07

mvabund: multivariate analysis 4 ecology - A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology.
Tags: Ecology, community ecology, generalized linear models, resampling methods, multivariate

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-05-18 05:57

olea - olea provides functions for objectively testing for over-or underrepresentation of tip states in phylogenetic trees. The package also provides some basic tree traversal functions.
Tags: Bioinformatics, community ecology, phylogeny
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-04-12 20:51

pcurve: principal curves - Package pcurve fits principal curves in high dimensions. It can be thought of as a non-linear form of PCA. pcurve is an R port of Glenn De'aths pcurve library for S-Plus.
Tags: principal curves, ordination, Ecology, Machine Learning, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, community ecology, constrained ordination, ecological models, ecology, environmetrics, machine learning, multivariate, multivariate regression, multivariate smoothing, multivariate statistics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-05-30 16:42

picante - PICANTE: Phylocom integration, community analyses, null-models, traits and evolution in R
Tags: beta diversity, community ecology, diversity, ecology, phylogeny

Activity Percentile: 0
Activity Ranking: 0
Registered: 2008-01-16 22:15

vegan - Community Ecology Package - 'vegan' is a CRAN package for the analysis of ecological communities. It has tools for analysing ecological diversity, and for the multivariate analysis of communities (NMDS, pCCA, pRDA etc.)
Tags: minimum spanning tree, weighted averages, species abundance model, Mantel test, local NMDS, nestedness, community null model, PCNM, PRC, global NMDS, MRPP, CCA, pCCA, RDA, pRDA, dbRDA, constrained ordination, canonical ordination, bioenv, detrended correspondence analysis, DCA, dissimilarity, distance, ecology, ordination, diversity, correspondence analysis, multidimensional scaling, nonparametric anova, functional diversity, taxonomic diversity, beta diversity, rarefaction, species pool, extrapolated richness, community ecology, species accumulation, diversity partioninig, variance partitioning, isotonic regression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2007-09-05 13:59

vegsoup - classes for phytosociology - S4 classes for vegetation-plot data (relev├ęs) documenting community structure, sites data, taxonomy and spatial representation. Methods are provided for data manipulation, clustering, indicator species analysis and typesetting tables with LaTex.
Tags: community ecology, diversity, ecology, spatial, spatial data, clustering, database, raster

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-06-07 12:24

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