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31 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
Automated phenological analyses - Automated processing of webcam images for phenological classification: With the present R package, regions of interest on given webcam images can be defined with low manual effort containing pixels with high phenological information.
Tags: image analysis, ecology, clustering, phenology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-05-26 14:30

Bertin matrices - Matrix manipulation and display, following the proposals of J. Bertin. Bertin’s permutation matrices give simple and effective tools for the graphical analysis of data matrices or tables.
Tags: Visualization, clustering, colors, ordination, plotting, visualization

Activity Percentile: 0
Activity Ranking: 0
Registered: 2007-11-29 20:50

CLAG - This package enables easy use in R of the CLAG clustering algorithm: "CLAG: an unsupervised non hierarchical clustering algorithm handling biological data", by Linda Dib and Alessandra Carbone, BMC Bioinformatics 2012
Tags: clustering
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-04-12 09:27

Clustericat - This package performs clustering for categorical data-set by the conditional correlated mixture model. It contains a function clusteringcat() performing the clustering on categorical data-set and returns object of appropriate class.
Tags: Clustering, Gibbs sampling, Multivariate Analysis, clustering, mixture model

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-12-05 14:22

CoModes - CoModes focuses on the categorical data clustering. The function CoModescluster performs the model selection and the maximum likelihood estimation. CoModes also contains tools functions.
Tags: Clustering, Gibbs sampling, Mixture, Multivariate Analysis, clustering, data mining, mixture model
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-12-20 08:35

Computer-Assisted Analysis of Mixtures - Tools for the analysis of finite semiparametric mixtures. These are useful when data is heterogeneous, e.g. in pharmacokinetics or meta-analysis. The NPMLE and VEM algorithms (flexible support size) and EM algorithms (finite support case) are provided.
Tags: mixture modelling, biostatistics, classification, clustering
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-03-06 09:55

DHclus - Divisive hierarchical clustering algorithm with automatic determination of components
Tags: R, clustering, data mining

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-08-31 12:26

Funclustering - This project is for creating an R package which proposes a model-based clustering algorithm for multivariate functional data. The package perform also functional PCA for univariate or multivariate functional data with differents weigths for each curves.
Tags: functional data, clustering, multivariate functional pca, EM, C++, Clustering, functional data analysis
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-08-05 16:38

Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.
Tags: Bioinformatics, Classification, Clustering, Fuzzy Sets, Graphical model, Machine Learning, Machine learning, Multivariate Analysis, Multivariate Techniques, Whole-genome, classification, clustering, copula, machine learning, mixed model, multivariate statistics, parametric model, mixture model

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-05-10 07:45

MixCluster - MixCluster performs the cluster analysis of mixed-type data by using a mixture model of Gaussian copulas. Thus, the intra-class dependencies are modelized and the one-dimensional margins of the components follow classical distributions.
Tags: Bayesian, Clustering, Estimation, Gibbs sampling, Machine Learning, Machine learning, Mixture, Multivariate Analysis, PCA, Visualisation, Visualization, clustering, copula, data mining, density estimation, mixed model, mixture, mixture model, mixture modelling, model estimation
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-08-11 14:03

Multilevel frailty models - Semiparametric proportional hazard models with K random effects, estimated via the EM-PL algorithm (Horny, 2009)
Tags: biostatistics, clustering, dependence, economics, event histories, event sequence, finance, frailty models, longitudinal data, mixed effect models, mixed model, model estimation, multicenter, multivariate, heterogeneity, overdispersion, survival, semiparametric model

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-04-30 07:14

OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
Tags: Bioinformatics, Clustering, Differential expression analysis, Gene expression, Multiple Comparisons, Multivariate Analysis, bioinformatics, clustering, false discovery rate, gene expression, high dimentional data, microarray, multivariate, permutation tests

Activity Percentile: 95
Activity Ranking: 4
Registered: 2013-08-29 17:48

ORCME - ORCME project develops a package for order restricted clustering of microarray experiments. It reflects on-going research of the bioinformatics group within the Center for Statistics at UHasselt.
Tags: order resticted, clustering, microarray experiment, dose-response profile

Activity Percentile: 0
Activity Ranking: 0
Registered: 2008-08-21 11:49

Parametric Frailty Models - Parametric Frailty Models, fitted by maximum marginal likelihood method. Possible basline hazards: Weibull, Exponential, Gompertz, logNormal and loglogistic Possible Frailty distributions: Gamma, Inverse Gaussian and Positive Stable
Tags: survival, frailty models, parametric model, Weibull, Exponential, Gompertz, lognormal, loglogistic, gamma, inverse gaussian, positive stable, clustering, overdispersion, biostatistics, marginal model, marginal likelihood, likelihood, multicenter, heterogeneity, mixed effect models, mixed model

Activity Percentile: 57
Activity Ranking: 27
Registered: 2011-10-28 16:21

R integration for the stk++ library - STK++ is a versatile, fast, reliable and elegant collection of C++ classes for statistics. Using rtkpp, R users and package developers will not need to install STK++ itself in order to use the library.
Tags: Rcpp, Linear Algebra, Clustering, classification, clustering, C++, library
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-08-06 20:09

RMacoqui - RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).
Tags: chorotypes, biodiversity, diversity, biogeography, geographical biology, distributions, distribution patterns, biostatistics, probabilistic analysis, fuzzy logic, fuzzy sets, similarity, geographic attractors, classification, clustering, ecology, multivariate analysis, spatial data, spatial methods

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-07-04 09:37

SOMbrero - SOMbrero is an R package dedicated to online Self-Organizing Map. It can be used to train SOM for numeric datasets, contingency tables and dissimilarity data.
Tags: Self-Organizing Map, clustering

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-06-28 10:16

Simulation of clustered multi-state data - R functions implementing the simulation procedure proposed at http://www.slideshare.net/federicorotolo/a-copulabased-simulation-method-for-clustered-multistate-survival-data to generate survival data with a clustered and multi-state structure.
Tags: simulation, copula, frailty models, multi-state models, competing risks models, biostatistics, clustering, survival

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-12-03 10:40

Species identity and evolution in R - A suite of tools for investigating the evolution, variation and identification of species. Includes functions for DNA barcoding, and sliding window analyses.
Tags: Bioinformatics, Genetic Algorithms, clustering, diversity, ordination, phylogeny, sequence analysis, species accumulation, taxonomic diversity, tree, visualization

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-04-15 00:09

Trajectory Similarity - Similarity measures for trajectories, including Hausdorff, equal-time, Fréchet distances, dynamic time warping (DTW), longest common subsequence (LCSS), spatiotemporal locality inside polylines (STLIP). Arbitrary dimension, flexible distance metric.
Tags: clustering, distance, movement, similarity, spatial data, spatio-temporal, trajectory

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-07-10 15:16

31 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
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