Software Map
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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
23 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
AFLP  A package for the normalisation on classification of AFLP (Amplification Fragment Length Polymorphism) data.  
Tags: Bioinformatics, DNA, Normalization, classification, diversity, ecology, taxonomic diversity  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110302 11:24 
Applied Predictive Modeling  The package is an R companion to the Springer book "Applied Predictive Modeling". It contains several functions and data sets used in the text, as well as R scripts to recreate the analyses in each chapter.  
Tags: Classification, Machine Learning, Machine learning, Regression, classification, machine learning, regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130208 18:59 
Class Prediction  A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize trainingtesting regimens and crossvalidation schemes.  
Tags: Bioinformatics, Gene expression, Genetic Algorithms, Machine Learning, Machine learning, Multivariate Regression, SelfOrganizing Map, bioinformatics, classification, crossvalidation, gene expression, genetic algorithms, machine learning, model, prediction, validation  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20140203 16:15 
Classification rules  An R package for learning classification rules from data.  
Tags: data mining, classification, rule induction, rule learning, rule quality measures  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120410 12:11 
ComputerAssisted Analysis of Mixtures  Tools for the analysis of finite semiparametric mixtures. These are useful when data is heterogeneous, e.g. in pharmacokinetics or metaanalysis. The NPMLE and VEM algorithms (flexible support size) and EM algorithms (finite support case) are provided.  
Tags: mixture modelling, biostatistics, classification, clustering  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130306 09:55 
DiagnosisMed  DiagnosisMed is a package to analyze data from diagnostic test accuracy research evaluating health conditions.  
Tags: Classification, classification  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080919 23:16 
ExactSampling  ExactSampling is an R package for the exact crossvalidataion for kNN, regression and bootstrap.  
Tags: Classification, Regression, bootstrapping, classification  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140115 12:59 
Fast and Frugal Trees [early alpha!]  A package for the analysis of Fast and Frugal trees, simple classification trees with a simplistic structure. Create FFtrees manually, or via induction through bruteforce/chasing/monte carlo. ATTENTION : PREALPHA STAGE.  
Tags: Fast, Frugal, Tree, Classification, Fit, Clustering, R, classification, data mining, model evaluation  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20141007 10:23 
FusedANOVA  This package adjusts a penalized ANOVA model with FusedLASSO (or Total Variation) penality, i.e. a sum of weighted l1norm on the difference of each coefficient. The fitting procedure is accompanied with a highly efficient crossvalidation method.  
Tags: sparse method, penalized regression, crossvalidation, classification  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130926 07:58 
Hierarchical RandomForest  An R package that runs randomForest as a local classifier at each parent node of a predefined treelike class hierarchy.  
Tags: Class Hierarchy, habitat, landcover, landuse, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, outofbag, random forest  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150115 14:20 
Layered and chained mixture models  Layered and chained mixture models for various univariate and multivariate distributions.  
Tags: Bioinformatics, Classification, Clustering, Fuzzy Sets, Graphical model, Machine Learning, Machine learning, Multivariate Analysis, Multivariate Techniques, Wholegenome, classification, clustering, copula, machine learning, mixed model, multivariate statistics, parametric model, mixture model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110510 07:45 
Naive Discriminative Learning  The ndl packages is an R package for Naive discriminative Learning. It implements learning and classification models based on the RescorlaWagner equations and their equilibria equations.  
Tags: learning, classification, Rescorla, Wagner, psychology, linguistics  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121121 14:13 
R integration for the stk++ library  STK++ is a versatile, fast, reliable and elegant collection of C++ classes for statistics. Using rtkpp, R users and package developers will not need to install STK++ itself in order to use the library.  
Tags: Rcpp, Linear Algebra, Clustering, classification, clustering, C++, library  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140806 20:09 
RMacoqui  RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (BaroniUrbani et al., 1978).  
Tags: chorotypes, biodiversity, diversity, biogeography, geographical biology, distributions, distribution patterns, biostatistics, probabilistic analysis, fuzzy logic, fuzzy sets, similarity, geographic attractors, classification, clustering, ecology, multivariate analysis, spatial data, spatial methods  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150704 09:37 
RuleBased Models  This project contains GPL versions of Quinlan's C5.0 and Cubist models.  
Tags: Classification, Machine Learning, boosting, classification, machine learning, pattern recognition, rule induction, tree  
Activity Percentile: 0 Activity Ranking: 0 Registered: 20110225 15:11 
UMB statistics  Text book statistics and R Commander plugins and other useful packages developed by the statitics group at the Norwegian University of Life Sciences.  
Tags: Multivariate Regression, Rcmdr, Regression, Visualization, classification, clustering, mixed effect models, multivariate statistics, teaching  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130207 11:33 
arules  Mining Association Rules  Infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules). arules is now maintained on Github: https://github.com/mhahsler/arules  
Tags: data mining, frequent patterns, association rules, visualization, classification  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20070521 13:55 
bootFS  bootFS is a convenient wrapper to multiple methods for twoclass or multiclass classification and feature selection in highthroughput omicsdata. It is designed to translate individual feature sets into biologically meaningful and robust biomarkers.  
Tags: Cancer, Classification, classification, feature selection  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120912 10:13 
forestFloor  stable: http://cran.rproject.org/web/packages/forestFloor/index.html dev: https://github.com/sorhawell/forestFloor forestFloor is a package to visualize random forest  
Tags: C++, Regression, Bioinformatics, Chemoinformatics, FNN, Machine Learning, Rcpp, classification, crossvalidation, data mining, kNN, nonlinear models, random forest  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150101 21:32 
fuzzySim  fuzzySim is an R package for calculating fuzzy similarity in species occurrence patterns.  
Tags: R, similarity, species distributions, spatial, ecology, binary data, fuzzy, fuzzy sets, fuzzy logic, classification, clustering, favourability model, trend surface analysis, FDR, VIF  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20140227 18:53 
23 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>