Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
5 projects in result set.
MELON  Methylation Enriched LOci Normalization for genomewide DNA methylation experiments  
Tags: Normalization, Secondgeneration Sequencing, Bioinformatics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120418 14:21 
SplicingTypesAnno  SplicingTypesAnno is a userfriendly R package, extracting, annotating and analyzing alternative splicing types at exon/intron level for sequence alignment files from RNASeq.  
Tags: Bioinformatics, Secondgeneration Sequencing  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140918 12:24 
casper  casper infers alternative splicing from highthroughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.  
Tags: Differential expression analysis, Next generation Sequencing, RNAseq, Secondgeneration Sequencing  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20111011 08:51 
rbamtools  Rpackage for reading and writing BAM files based on samtools library by Heng Li.  
Tags: BAM files, Alignment, Bioinformatics, Secondgeneration Sequencing  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20110704 15:55 
seqTools  Quality control algorithms on fastq files  
Tags: Fastq files, Bioinformatics, Clustering, QC, Secondgeneration Sequencing  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140422 15:55 