Software Map
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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
75 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4>
Matrix Methods and Classes  R package Matrix provides a hierarchy of matrix classes, both dense & sparse. Numerous methods & operations on these matrices using BLAS & Lapack; further CHOLMOD and other libraries from the SuiteSparse collection.  
Tags: Class Hierarchy, Factorization, Linear Algebra, Numeric Computation, R, linear mixed effects, linear models, matrix manipulation, sparse linear model  

Activity Percentile: 49 Activity Ranking: 19 Registered: 20070817 17:30 
MuMIn  multimodel inference  This package contains functions for model selection and model averaging based on information criteria (AICc, AIC or alike).  
Tags: model selection, model averaging, linear models, generalized linear models, GLM, R, R package, Statistics, linear mixed effects  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20090130 14:25 
Multilocus Random Mixed Linear Model  Multilocus Random Mixed Linear Model for Genomewide Association Study  
Tags: Bioinformatics, Biostatistics, Genetics, MLM, R, SNP, Wholegenome, mixed model, multidimensions  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20160225 14:46 
NCCTR  A package to be used in the analysis of ToxCast chemical screening data.  
Tags: R, database, dbi, Bioinformatics & Biostatistics, HTS  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140626 02:19 
ODE Solvers Compiled OnDemand  The odeintr package generates compiled ODE solvers ondemand. It uses the Boost odeint library and Rcpp.  
Tags: C++, Ecology, Economics, Fast, Fisheries, Forestry, HPC, ODE, R, Rcpp, dynamic systems, ecological models, ordinary differential equations, simulation, solver  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150506 21:14 
ParallLogicReg  ParallLogicReg: an R library for analysis of SNPSNP interaction using parallel computing.  
Tags: R, Wholegenome, high performance computing  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20110503 23:26 
Patchwork  Allelespecific Copynumber analysis for wholegenome sequenced data in CompleteGenomics or BAM format.  
Tags: Copynumber, Wholegenome, Cancer, R, Visualization, Bioinformatics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20111031 13:53 
Predictive Modelling Markup Language  Export various models as Predictive Modelling Markup Language (PMML).  
Tags: Artificial Neural Network, Boost, Classification, Clustering, Machine Learning, R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130128 09:12 
Probabilistic Suffix Trees  The PST library allows to fit and visualize Probabilistic Suffix Trees (PST), the construction that stores Variable Length Markov Chains (VLMC). Fitted PSTs can be used to predict, generate or impute categorical sequences.  
Tags: R, data mining, sequence analysis, probabilistic suffix trees, variable length markov chains  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120104 10:50 
Quantitative Risk Management  This package is designed to accompany the book Quantitative Risk Management: Concepts, Techniques and Tools by Alexander J. McNeil, Rudiger Frey and Paul Embrechts. The package is a modfied version of the package 'QRMlib' (see CRAN archive).  
Tags: Finance, R, finance, time series  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120426 14:34 
R/exams: Automatic Generation of Exams  Oneforall exams generator. Exercises: Singlechoice, multiplechoice, arithmetic, string, combinations thereof (cloze). Input formats: LaTeX, Markdown. Output formats: PDF, HTML, Docx, Moodle XML, QTI 1.2, QTI 2.1, Blackboard, OLAT, Ilias, ARSnova, ...  
Tags: exams, elearning, multiple choice, arithmetic problems, Sweave, knitr, R, LaTeX, HTML, XML, Moodle, OLAT, Blackboard, Ilias, ARSnova  

Activity Percentile: 97 Activity Ranking: 2 Registered: 20120212 00:43 
R2MLwiN  R2MLwiN is an R command interface to the MLwiN multilevel modelling software package, allowing users to fit multilevel models using MLwiN from within the R environment.  
Tags: R, MLwiN, MCMC, IGLS, Bayesian, mixed model  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130210 13:19 
R: CDT in Cloud Computing for Big Data  Functions and datasets used for teaching in Newcastle University's CDT in Cloud Computing for Big Data. This package is used in the "Introduction to R" course.  
Tags: R, teaching  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140919 14:07 
R: CDT in Cloud Computing for Big Data 2  Functions and datasets used for teaching in Newcastle University's CDT in Cloud Computing for Big Data. This package is used in the "R Programming" course.  
Tags: R, teaching  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140919 14:10 
R: CDT in Cloud Computing for Big Data 3  Functions and datasets used for teaching in Newcastle University's CDT in Cloud Computing for Big Data. This package is used in the "Statistical Modelling" course.  
Tags: R, teaching  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140919 14:12 
R: CDT in Cloud Computing for Big Data 4  Functions and datasets used for teaching in Newcastle University's CDT in Cloud Computing for Big Data. This package is used in the "Efficient R Programming" course.  
Tags: R, teaching  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140919 14:13 
R: CDT in Cloud Computing for Big Data 5  Functions and datasets used for teaching in Newcastle University's CDT in Cloud Computing for Big Data. This package is used in the "Advanced Graphics" course.  
Tags: R, teaching  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140919 14:14 
RHmm  Simulations and estimations of discrete, univariate or multivariate gaussian, mixture of univariate or multivariate gaussian hidden Markov models.  
Tags: C++, R  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20071022 08:05 
RNetLogo (Discontinued)  RNetLogo is an interface to the agentbased modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.  
Tags: agentbased Model, Animal, Artificial Neural Network, Ecology, Economics, Fisheries, R, dynamic systems, individualbased models, individualbasedmodel, political analysis, population dynamics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110819 15:59 
Rcpp  Seamless R and C++ Integration  The Rcpp package provides a C++ library which facilitates the integration of R and C++. R data types (SEXP) are matched to C++ objects in a class hierarchy. All R types are supported and each type is mapped to a dedicated class.  
Tags: C++, R, library  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080301 16:33 
75 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4>