# Software Map

**Tag cloud | Project Tree | Project List**

ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

**4**projects in result set.

AVHRR probabilistic cloud and snow mask - This package consists of set of procedures used to pre-process land cover, DEM, surface skin temperature data, generate probabilistic cloud and snow mask for AVHRR satellite data, post-classify the results into a binary form, compute cloud shadow mask. | |

Tags: raster, FNN, PCA, ICS | |

This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0Activity Ranking: 0Registered: 2013-03-25 08:10 |

Augmented Prediction and Variable Select - The project is be focused on the development of R wrappers for glmnet package in order to evaluate the added value of multiple predictors set to the predictive model. In addition the quality of variable selection would be evaluated. | |

Tags: Multivariate Analysis, Multivariate Regression, PCA, Prediction, R, Rcpp, group lasso, lasso, model selection, regularization, sparse group lasso | |

This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0Activity Ranking: 0Registered: 2014-11-06 13:42 |

MixCluster - MixCluster performs the cluster analysis of mixed-type data by using a mixture model of Gaussian copulas. Thus, the intra-class dependencies are modelized and the one-dimensional margins of the components follow classical distributions. | |

Tags: Bayesian, Clustering, Estimation, Gibbs sampling, Machine Learning, Machine learning, Mixture, Multivariate Analysis, PCA, Visualisation, Visualization, clustering, copula, data mining, density estimation, mixed model, mixture, mixture model, mixture modelling, model estimation | |

This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0Activity Ranking: 0Registered: 2014-08-11 14:03 |

plumbCNV: [see github: nicholasjcooper] - It has been shown that a comprehensive quality control battery for Log-R-Ratio intensity data is needed to reduce the high false positive rate for rare CNV detection [Shtir et al, 2013]. PlumbCNV is an R package that automates this QC pipeline. | |

Tags: CNV, CNP, SNP, QC, plumbCNV, PCA, bigmemory, bigalgebra, plink, penncnv, R, Copy number variant, microarray, illumina, affy | |

This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0Activity Ranking: 0Registered: 2013-02-07 14:22 |