Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
25 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
Augmented Prediction and Variable Select  The project is be focused on the development of R wrappers for glmnet package in order to evaluate the added value of multiple predictors set to the predictive model. In addition the quality of variable selection would be evaluated.  
Tags: Multivariate Analysis, Multivariate Regression, PCA, Prediction, R, Rcpp, group lasso, lasso, model selection, regularization, sparse group lasso  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20141106 13:42 
BCE  Bayesian Compositional Estimator. Estimating sample (taxonomic) composition from biomarker data. Biologists may know this method as "Chemtax".  
Tags: Bayesian, Multivariate Regression, Multivariate Techniques, taxonomic diversity  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20080415 06:56 
Benchmarking genomic data integration  Comparison pipeline for multiplatform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations  
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, RForge, Wholegenome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110202 00:51 
Chain graph models in R  Software for fitting (block recursive) chain graphs in R.  
Tags: Graphical model, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, Variables Selection, data mining, machine learning, markov, model estimation, multivariate, multivariate regression, multivariate statistics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150626 07:16 
Class Prediction  A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize trainingtesting regimens and crossvalidation schemes.  
Tags: Bioinformatics, Gene expression, Genetic Algorithms, Machine Learning, Machine learning, Multivariate Regression, SelfOrganizing Map, bioinformatics, classification, crossvalidation, gene expression, genetic algorithms, machine learning, model, prediction, validation  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20140203 16:15 
DirichletReg  Dirichlet Regression  This project implements Dirichlet regression models for the analysis of compositional data. Starting with the basic fit routines, new functions (model selection, graphics, etc.) will be added and tested here, before being submitted to CRAN.  
Tags: Dirichlet Regression, Compositional Data, Multivariate Regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20100926 14:19 
HighDimensional Metrics  This package provides the implementation of selected highdimensional statistical and econometric methods which enable estimation and valid postselection inference on treatment and structural parameters in a highdimensional setting.  
Tags: Treatment Effects, Causal effects, Machine Learning, Multivariate Regression, Structural Equation Modelling, Instrumental Variables, high dimentional data, lasso  

Activity Percentile: 55 Activity Ranking: 16 Registered: 20150524 13:36 
MPAgenomics  This package contains an implementation of the lars algorithm for the lasso and fusion penalization. It works even if the number of covariate is greater than the number of individuals.  
Tags: lasso, lars, sparse linear model, C++, genomic, Bioinformatics, Multivariate Analysis, Multivariate Regression, high dimentional data, low sample size high dimensional data, penalized regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130418 16:20 
NullSens  Partitioning Abiotic and Biotic Contributions to Community Variation  
Tags: Ecology, Multivariate Analysis, Multivariate Regression, bioinformatics, community ecology, community null model, ecological Inference, ecological models, ecology, linear models, model estimation, model performance, molecular ecology, multivariate regression, nonparametric, null model, parametric model, permutation tests, prediction, regression, robust statistics, simulations, spatial regression, spatiotemporal statistics, species abundance model, species distributions, statistical inference, variance partitioning  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140505 19:49 
QSAR metrics  Implementation of the classical metrics for QSAR like Q2 and R2 pred (Q2 external) and set of novel rm2 metrics to be applied in differentiating the “good” (predictive) models from the “bad” (low predictive).  
Tags: Bioinformatics, Chemoinformatics, Multivariate Analysis, Multivariate Regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121124 18:15 
Sparse group lasso [MOVED TO GITHUB]  Algorithms for solving sparse group lasso optimization problems. [MOVED TO GITHUB] https://github.com/vincentdk  
Tags: sparse group lasso, group lasso, lasso, Bioinformatics, Biostatistics, Classification, Machine Learning, Multivariate Analysis, Multivariate Regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110228 13:48 
UMB statistics  Text book statistics and R Commander plugins and other useful packages developed by the statitics group at the Norwegian University of Life Sciences.  
Tags: Multivariate Regression, Rcmdr, Regression, Visualization, classification, clustering, mixed effect models, multivariate statistics, teaching  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130207 11:33 
YRandomization  Implementation of yrandomization (also called y scrambling or response randomization), a method said to be “probably the most powerful validation procedure”  
Tags: Bioinformatics, Chemoinformatics, Multivariate Regression, RStudio  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121124 18:19 
addendum  Utility functions that should have been in R: easy glmnet, pretty graphing and swift debugging and profiling.  
Tags: Bayesian, Multivariate Regression, R, likelihood, marginal model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110617 13:35 
flip: Multivariate Permutation Tests  A collection of Univariate and multivariate (i.e. overall and multiplicity control) permutation and rotation tests. dev page at https://github.com/livioivil/flip  
Tags: ANOVA, Multiple Comparisons, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, R, RForge, biostatistics, bivariate, bivariate analysis, categorical, conditional inference, high dimentional data, missing, missing data, missing values, mixed model, mixture model, mixture modelling, multi, multidimensions, multivariate, multivariate regression, multivariate statistics, nonparametric, nonparametric anova, permutation test, permutation tests, statistical inference  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20131016 19:04 
immunoassay  The purpose of this project is to allow finetuning of sigmoidal models beyond the limits of instrument software; and to provide functions for batch processing of output files and creation of reports with nice graphics.  
Tags: immunoassay, LaTeX, Multivariate Regression, Sweave, inverse gaussian, latex, nonlinear equations  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110317 12:58 
lassovar  Estimation and forecasting of multiple time series (VAR) using regularized estimators. Main focus on Lasso and variants.  
Tags: Multivariate Regression, large data, model estimation, model selection, regularization  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130116 16:08 
lm.br  Exact significance tests for a changepoint in linear or multiple linear regression. Confidence intervals and confidence regions with exact coverage probabilities for the changepoint.  
Tags: changepoint, breakpoint, brokenline regression, change detection, linear models, nonlinear models, regression, structural break, thresholds, break detection, Regression, Multivariate Regression, multivariate, multivariate regression, multiple regression, Multivariate Analysis  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130225 20:29 
missForest  The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an outofbag imputation error estimate.  
Tags: imputation, random forest, missing, missing data, missing values, missingness, outofbag, Bioinformatics, Classification, Multivariate Regression, Multivariate Techniques, R  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110518 08:28 
25 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>