Software Map
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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models survival teaching text mining time series visualization
26 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
Augmented Prediction and Variable Select  The project is be focused on the development of R wrappers for glmnet package in order to evaluate the added value of multiple predictors set to the predictive model. In addition the quality of variable selection would be evaluated.  
Tags: Multivariate Analysis, Multivariate Regression, PCA, Prediction, R, Rcpp, group lasso, lasso, model selection, regularization, sparse group lasso  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20141106 13:42 
Chain graph models in R  Software for fitting (block recursive) chain graphs in R.  
Tags: Graphical model, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, Variables Selection, data mining, machine learning, markov, model estimation, multivariate, multivariate regression, multivariate statistics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150626 07:16 
Clustericat  This package performs clustering for categorical dataset by the conditional correlated mixture model. It contains a function clusteringcat() performing the clustering on categorical dataset and returns object of appropriate class.  
Tags: Clustering, Gibbs sampling, Multivariate Analysis, clustering, mixture model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20131205 14:22 
CoModes  CoModes focuses on the categorical data clustering. The function CoModescluster performs the model selection and the maximum likelihood estimation. CoModes also contains tools functions.  
Tags: Clustering, Gibbs sampling, Mixture, Multivariate Analysis, clustering, data mining, mixture model  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20131220 08:35 
Extremal Dependence  Extremal Dependence package provides parametric and nonparametric statistical methods for modelling and estimating the dependence of extreme values  
Tags: Multivariate Analysis, Multivariate Techniques, extreme value analysis, multivariate, nonparametrics, optimization  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20141202 11:09 
HTDA (High Throughput Data Analysis)  A generic platform for the analysis of high throughput transcriptomics, proteomics and metabolomics data.  
Tags: Bioinformatics, Differential expression analysis, Multivariate Analysis, Next generation Sequencing, RNAseq  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130628 11:59 
Layered and chained mixture models  Layered and chained mixture models for various univariate and multivariate distributions.  
Tags: Bioinformatics, Classification, Clustering, Fuzzy Sets, Graphical model, Machine Learning, Machine learning, Multivariate Analysis, Multivariate Techniques, Wholegenome, classification, clustering, copula, machine learning, mixed model, multivariate statistics, parametric model, mixture model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110510 07:45 
MPAgenomics  This package contains an implementation of the lars algorithm for the lasso and fusion penalization. It works even if the number of covariate is greater than the number of individuals.  
Tags: lasso, lars, sparse linear model, C++, genomic, Bioinformatics, Multivariate Analysis, Multivariate Regression, high dimentional data, low sample size high dimensional data, penalized regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130418 16:20 
MixCluster  MixCluster performs the cluster analysis of mixedtype data by using a mixture model of Gaussian copulas. Thus, the intraclass dependencies are modelized and the onedimensional margins of the components follow classical distributions.  
Tags: Bayesian, Clustering, Estimation, Gibbs sampling, Machine Learning, Machine learning, Mixture, Multivariate Analysis, PCA, Visualisation, Visualization, clustering, copula, data mining, density estimation, mixed model, mixture, mixture model, mixture modelling, model estimation  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140811 14:03 
NullSens  Partitioning Abiotic and Biotic Contributions to Community Variation  
Tags: Ecology, Multivariate Analysis, Multivariate Regression, bioinformatics, community ecology, community null model, ecological Inference, ecological models, ecology, linear models, model estimation, model performance, molecular ecology, multivariate regression, nonparametric, null model, parametric model, permutation tests, prediction, regression, robust statistics, simulations, spatial regression, spatiotemporal statistics, species abundance model, species distributions, statistical inference, variance partitioning  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140505 19:49 
OOMPA  OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct objectoriented tools with a consistent user interface.  
Tags: Bioinformatics, Clustering, Differential expression analysis, Gene expression, Multiple Comparisons, Multivariate Analysis, bioinformatics, clustering, false discovery rate, gene expression, high dimentional data, microarray, multivariate, permutation tests  

Activity Percentile: 33 Activity Ranking: 21 Registered: 20130829 17:48 
Open TFDEA (Tech Forecast DEA)  Open TFDEA (Technology Forecasting Data Envelopment Analysis). Analyzes technology data to predict future technology performance and ROC (rate of change).  
Tags: Multivariate Analysis, Multivariate Techniques, Economics  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130402 19:10 
PsychoR  PsychoR is a collection of various "psychometric" techniques in R: models of the Gififamily (homals), multidimensional scaling (smacof), correspondence analysis (anacor), monotone regression (pava), aspects, exponential geometric models, etc.  
Tags: Psychometrics, Exploratory Data Analysis, CA, CCA, Multidimensional Scaling, Multivariate Analysis  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20071009 23:28 
QSAR metrics  Implementation of the classical metrics for QSAR like Q2 and R2 pred (Q2 external) and set of novel rm2 metrics to be applied in differentiating the “good” (predictive) models from the “bad” (low predictive).  
Tags: Bioinformatics, Chemoinformatics, Multivariate Analysis, Multivariate Regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121124 18:15 
STOPS  Methods that fit nonlinear distance transformations in multidimensional scaling and tradeoff the fit with structure considerations to find optimal parameters.  
Tags: Clustering, Multidimensional Scaling, Multivariate Analysis, Multivariate Techniques, data mining, multidimensional scaling, multivariate, multivariate statistics  

Activity Percentile: 57 Activity Ranking: 14 Registered: 20150212 00:09 
Sparse group lasso [MOVED TO GITHUB]  Algorithms for solving sparse group lasso optimization problems. [MOVED TO GITHUB] https://github.com/vincentdk  
Tags: sparse group lasso, group lasso, lasso, Bioinformatics, Biostatistics, Classification, Machine Learning, Multivariate Analysis, Multivariate Regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110228 13:48 
The MDSGUI  The MDSGUI is a graphical user interface (GUI) for performing Multidimensional Scaling applications and interactively analysing the results all within the GUI environment. Features include MDS plots, Shepard plots and animated optimisation.  
Tags: Multidimensional Scaling, Graphical User Interface, Multivariate Analysis  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121115 06:50 
candisc: Canonical discriminant analysis  The candisc package provides computational methods for generalized canonical discriminant analysis and lowdimensional visualization via the related heplots package.  
Tags: Multivariate Analysis, Visualization, visualization  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20081101 19:22 
concurrence topology  Concurrence topology is a method for analyzing the dependence structure in multivariate binary data. It is particularly well suited for describing highorder dependence.  
Tags: Multivariate Analysis, categorical, fMRI, high dimentional data, low sample size high dimensional data, multivariate, multivariate statistics, nonparametrics, nonparametric, time series  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130220 19:07 
26 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>