Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models survival teaching text mining time series visualization
22 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
ANN  This package provides a feedforward Artificial Neural Network (ANN) optimized by Genetic Algorithm (GA).  
Tags: Artificial Neural Network, Machine Learning, C++, Finance, Genetic Algorithms, R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20111209 18:43 
Applied Predictive Modeling  The package is an R companion to the Springer book "Applied Predictive Modeling". It contains several functions and data sets used in the text, as well as R scripts to recreate the analyses in each chapter.  
Tags: Classification, Machine Learning, Machine learning, Regression, classification, machine learning, regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130208 18:59 
Benchmarking genomic data integration  Comparison pipeline for multiplatform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations  
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, RForge, Wholegenome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110202 00:51 
Class Prediction  A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize trainingtesting regimens and crossvalidation schemes.  
Tags: Bioinformatics, Gene expression, Genetic Algorithms, Machine Learning, Machine learning, Multivariate Regression, SelfOrganizing Map, bioinformatics, classification, crossvalidation, gene expression, genetic algorithms, machine learning, model, prediction, validation  

Activity Percentile: 79 Activity Ranking: 7 Registered: 20140203 16:15 
Dependency modeling toolbox  Modelbased tools for the discovery and analysis of statistical dependencies between data sources.  
Tags: Bayesian, CCA, Exponential, Machine Learning, Machine learning, analytics, dependence, machine learning, marginal likelihood, multivariate, pCCA, robust statistics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20100408 11:22 
Finding word alignment using IBM model 1  For a given SentenceAligned Parallel Corpus, this package aligns words in every sentence pair. Further, it builds a suggested dictionary of two languages based on given corpus.  
Tags: alignment, Machine Learning, NLP, linguistics, data mining  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20141115 06:43 
Hierarchical RandomForest  An R package that runs randomForest as a local classifier at each parent node of a predefined treelike class hierarchy.  
Tags: Class Hierarchy, habitat, landcover, landuse, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, outofbag, random forest  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150115 14:20 
HighDimensional Metrics  This package provides the implementation of selected highdimensional statistical and econometric methods which enable estimation and valid postselection inference on treatment and structural parameters in a highdimensional setting.  
Tags: Treatment Effects, Causal effects, Machine Learning, Multivariate Regression, Structural Equation Modelling, Instrumental Variables, high dimentional data, lasso  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150524 13:36 
Layered and chained mixture models  Layered and chained mixture models for various univariate and multivariate distributions.  
Tags: Bioinformatics, Classification, Clustering, Fuzzy Sets, Graphical model, Machine Learning, Machine learning, Multivariate Analysis, Multivariate Techniques, Wholegenome, classification, clustering, copula, machine learning, mixed model, multivariate statistics, parametric model, mixture model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110510 07:45 
MEET.5.1:Motif Element Estimation Tools  MEET 5.1 is an Rpackage that includes a set of models, aprox. 550, and tools for the detection of cisregulatory sequences.  
Tags: Bioinformatics, Machine Learning, Sequence analysis, entropy, pattern recognition  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110810 14:27 
MixCluster  MixCluster performs the cluster analysis of mixedtype data by using a mixture model of Gaussian copulas. Thus, the intraclass dependencies are modelized and the onedimensional margins of the components follow classical distributions.  
Tags: Bayesian, Clustering, Estimation, Gibbs sampling, Machine Learning, Machine learning, Mixture, Multivariate Analysis, PCA, Visualisation, Visualization, clustering, copula, data mining, density estimation, mixed model, mixture, mixture model, mixture modelling, model estimation  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140811 14:03 
New Algorithms for Boosting  In this project recently developed algorithms and variants of L2Boosting will be implemented in R and provided as an package for other users.  
Tags: Bioinformatics, Economics, Machine Learning, Prediction, Statistics  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20160527 06:14 
Predictive Modelling Markup Language  Export various models as Predictive Modelling Markup Language (PMML).  
Tags: Artificial Neural Network, Boost, Classification, Clustering, Machine Learning, R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130128 09:12 
RuleBased Models  This project contains GPL versions of Quinlan's C5.0 and Cubist models.  
Tags: Classification, Machine Learning, boosting, classification, machine learning, pattern recognition, rule induction, tree  
Activity Percentile: 0 Activity Ranking: 0 Registered: 20110225 15:11 
Sparse group lasso [MOVED TO GITHUB]  Algorithms for solving sparse group lasso optimization problems. [MOVED TO GITHUB] https://github.com/vincentdk  
Tags: sparse group lasso, group lasso, lasso, Bioinformatics, Biostatistics, Classification, Machine Learning, Multivariate Analysis, Multivariate Regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110228 13:48 
Species Distribution Modelling  sdm is an extendable framework to develop species distributions models using individual and communitybased approaches, generate ensembles of models, evaluate the models, and predict species potential distributions in space and time.  
Tags: Bioinformatics, Biostatistics, Ecology, Machine Learning, animal, community ecology, ensemble forecasting, raster, spatial, spatial data, spatial methods, species distribution models, species distributions  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20140526 16:09 
autoAnn  automatic annotation package, especially for MOOC dateset  
Tags: Machine Learning, Machine learning  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150523 13:10 
forestFloor  stable: http://cran.rproject.org/web/packages/forestFloor/index.html dev: https://github.com/sorhawell/forestFloor forestFloor is a package to visualize random forest  
Tags: C++, Regression, Bioinformatics, Chemoinformatics, FNN, Machine Learning, Rcpp, classification, crossvalidation, data mining, kNN, nonlinear models, random forest  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150101 21:32 
l2boost  Efficient boosting method using the l2loss function with gradient descent along coordinate direction basis functions for linear regression.  
Tags: boosting, critical direction, gradientcorrelation, regularization, repressibility, solution path, Machine Learning  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120501 11:39 
pcurve: principal curves  Package pcurve fits principal curves in high dimensions. It can be thought of as a nonlinear form of PCA. pcurve is an R port of Glenn De'aths pcurve library for SPlus.  
Tags: principal curves, ordination, Ecology, Machine Learning, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, community ecology, constrained ordination, ecological models, ecology, environmetrics, machine learning, multivariate, multivariate regression, multivariate smoothing, multivariate statistics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130530 16:42 
22 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>