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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

15 projects in result set.
AcceptABEL - A package for controlling false-positives rate (FPR) in GWAS studies. The control is achieved via assessing marker-specific genomic inflation factor.
Tags: Bioinformatics, Confounders, Confounding, DNA, Genetics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-02-26 08:43

Bayesian Model for Rare Variant analysis - BMRV is an R package that can be readily applied to rare variant (RV) association analysis for various traits (continuous, binary and ordinal), designs (independent, family and twin) and genotype data (sequence and imputated).
Tags: Bayesian, Biostatistics, Genetics, Gibbs sampling, Sequence analysis, genetic interaction, genetics, linear models, mixed effect models
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-12-11 21:50

CNAV - A hidden Markov model approach is used to infer frequencies and haplotype phases of genotypes containing joint allelic and copy-number variation to be used in association studies.
Tags: Markov model, serial tempering, Gibbs sampling, Bayesian, Bioinformatics, Boost, C++, Genetics, bioinformatics, biostatistics, sampling
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-05-08 14:18

Coalescent for compartmental models - This package provides methods to compute the likelihood of a gene genealogy using coalescent models for populations with complex demographic histories.
Tags: population genetics, epidemiology, infectious disease, Bioinformatics, Ecology, Genetics, Phylogeny
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-01-09 23:07

Evolutionary Biology in R - Active development of this and my other package has been migrated to github http://coleoguy.github.io/software.html
Tags: Bioinformatics, Genetics, Phylogeny, Regression, data mining, education, educational tool, genetics, genomic, phylogeny, population genetics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-10-11 20:03

Low Rank Gaussian Process Regression - Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.
Tags: C++, Genetics, high performance computing, R, Regression, parallel computing

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-12-19 15:12

MORGAN Rtools - This project is to develop R functions for the analysis of the output of MORGAN, which is a software package developed for genetic epidemiology of complex traits. https://www.stat.washington.edu/thompson/Genepi/MORGAN/Morgan.shtml
Tags: Genetics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-02-10 00:09

Multilocus Random Mixed Linear Model - Multilocus Random Mixed Linear Model for Genome-wide Association Study
Tags: Bioinformatics, Biostatistics, Genetics, MLM, R, SNP, Whole-genome, mixed model, multi-dimensions
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-02-25 14:46

Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.
Tags: Cancer, Copynumber, DNA, Genetics, QC, SNP, bioinformatics, segmentation

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-10-20 01:21

ProbeAnnotator - Simple and efficient functions for the annotation of genomic platforms (e.g. Illumina, Affymetrix) using SAM alignment files or chromosomal location.
Tags: Platform Annotation, Probe Annotation, Bioinformatics, Bioinformatics & Biostatistics, C++, Genetics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-07-29 13:16

Tools for Whole-Genome Prediction - Statistical Tools for Whole-Genome Prediction of Complex Traits and Diseases
Tags: Bayesian, Genetics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-11-12 15:15

XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
Tags: Bioinformatics, Genetics, Ontology, Networks, Similarity, SNP

Activity Percentile: 76
Activity Ranking: 10
Registered: 2016-04-01 13:46

cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
Tags: C++, Genetics, mixed model, openmp, parallel computing, Bioinformatics, Bioinformatics & Biostatistics, Biostatistics, Gibbs sampling, Regression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-05-29 18:34

plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments.
Tags: Plant Breeding, Genetics, Plant Genomics, R, biostatistics, graphics, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-07-01 21:32

polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
Tags: Bioinformatics, Genetics, Plant Breeding, Plant Genomics, SNP, bioinformatics, heuristics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-05 10:27

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