Software Map
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ANOVA Artificial Neural Network Bayesian Bioinformatics C++ CCA Cancer Chemoinformatics Classification Clustering Copy number variant Copynumber DNA Ecology Finance GUI Genetic Algorithms Genetics Graphical User Interface HPC LaTeX Machine Learning Machine learning Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Normalization ODE Phylogeny R R-Forge Rcmdr Regression Sequence analysis Sweave Visualization Whole-genome analytics beta diversity biostatistics break detection categorical change detection classification clustering community ecology copula data mining database datasets dependence differential equations disease mapping dissimilarity distance distribution diagnostics distributions diversity dynamic systems ecological models ecology finance gene expression generalized linear models graphics high dimentional data inference likelihood linear programming longitudinal data machine learning marginal likelihood meta-analysis microarray microarray experiment mixed effect models mixed integer programming mixed model model comparison model estimation model selection model specification movement multivariate multivariate statistics nonlinear equations nonlinear models nonlinear programming nonparametric optimization ordination parametric model pattern recognition phylogeny plotting political analysis psychology raster regression remote sensing reporting resampling methods robust statistics sampling semiparametric model sequence analysis simulation social networks soil spatial spatial autocorrelation spatial classes spatial data spatial econometrics spatial methods spatial point patterns spatial regression spatio-temporal species distribution models spline statistical education survival teaching text mining time series trajectory trend analysis visualization
7 projects in result set.
| Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations | |
| Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate | |
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Activity Percentile: 0 Activity Ranking: 0 Registered: 2011-02-02 00:51 |
| Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection. | |
| Tags: Bioinformatics, Copy number variant, Copynumber, break detection, change detection | |
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Activity Percentile: 0 Activity Ranking: 0 Registered: 2012-11-27 16:51 |
| EBS - EBS is an R package for the Exact Bayesian Segmentation of profiles. Exploring the segmentation space, it computes posterior probabilities of quantities such as change-point localization, and proposes an efficient criterion for the choice of K. | |
| Tags: Bayesian, Copynumber, Sequence analysis, break detection | |
| This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0 Activity Ranking: 0 Registered: 2012-05-29 15:59 |
| Joint segmentation - This package implements functions to quickly segment multivariate signals into piecewise constant profiles. Typical application: joint segmentation of DNA copy number signals obtained from Single Nucleotide Polymorphism microarrays in cancer studies. | |
| Tags: Bioinformatics, CNV, Cancer, Copynumber, biostatistics, break detection, high dimentional data | |
| This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 66 Activity Ranking: 42 Registered: 2013-01-04 20:37 |
| Patchwork - Allele-specific Copy-number analysis for whole-genome sequenced data in CompleteGenomics or BAM format. | |
| Tags: Copynumber, Whole-genome, Cancer, R, Visualization, Bioinformatics | |
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Activity Percentile: 0 Activity Ranking: 0 Registered: 2011-10-31 13:53 |
| SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals. | |
| Tags: Copy number variant, Copynumber, break detection, change detection, optimization, segmentation | |
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Activity Percentile: 0 Activity Ranking: 0 Registered: 2012-11-27 16:58 |
| Segmentor3IsBack - Segmentor3IsBack is an R package for the optimal and fast segmentation of data-sets with respect to the log-likelihood loss. The main code has been developed in C++ in a versatile manner, and embeded in an R package. | |
| Tags: Copynumber, Sequence analysis, break detection, change detection, likelihood, optimization | |
| This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0 Activity Ranking: 0 Registered: 2012-05-24 16:38 |
