Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
20 projects in result set.
Applied Predictive Modeling  The package is an R companion to the Springer book "Applied Predictive Modeling". It contains several functions and data sets used in the text, as well as R scripts to recreate the analyses in each chapter.  
Tags: Classification, Machine Learning, Machine learning, Regression, classification, machine learning, regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130208 18:59 
Classification of RNA Structure Change  R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data.  
Tags: RNA, SHAPE, Bioinformatics & Biostatistics, Classification, machine learning  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150902 17:28 
DiagnosisMed  DiagnosisMed is a package to analyze data from diagnostic test accuracy research evaluating health conditions.  
Tags: Classification, classification  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080919 23:16 
ExactSampling  ExactSampling is an R package for the exact crossvalidataion for kNN, regression and bootstrap.  
Tags: Classification, Regression, bootstrapping, classification  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140115 12:59 
Fast and Frugal Trees [early alpha!]  A package for the analysis of Fast and Frugal trees, simple classification trees with a simplistic structure. Create FFtrees manually, or via induction through bruteforce/chasing/monte carlo. ATTENTION : PREALPHA STAGE.  
Tags: Fast, Frugal, Tree, Classification, Fit, Clustering, R, classification, data mining, model evaluation  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20141007 10:23 
Hierarchical RandomForest  An R package that runs randomForest as a local classifier at each parent node of a predefined treelike class hierarchy.  
Tags: Class Hierarchy, habitat, landcover, landuse, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, outofbag, random forest  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150115 14:20 
Hyperg Priors for GAM selection  This Rpackage implements objective Bayesian model selection with penalised splines, using a socalled hyperg prior for the parameters in the generalised additive model.  
Tags: variable selection, objective Bayes, Bayesian, Classification, generalized linear models, marginal likelihood, model comparison, multiplicity, multivariate, semiparametric model, spline  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110811 09:12 
Layered and chained mixture models  Layered and chained mixture models for various univariate and multivariate distributions.  
Tags: Bioinformatics, Classification, Clustering, Fuzzy Sets, Graphical model, Machine Learning, Machine learning, Multivariate Analysis, Multivariate Techniques, Wholegenome, classification, clustering, copula, machine learning, mixed model, multivariate statistics, parametric model, mixture model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110510 07:45 
Predictive Modelling Markup Language  Export various models as Predictive Modelling Markup Language (PMML).  
Tags: Artificial Neural Network, Boost, Classification, Clustering, Machine Learning, R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130128 09:12 
RuleBased Models  This project contains GPL versions of Quinlan's C5.0 and Cubist models.  
Tags: Classification, Machine Learning, boosting, classification, machine learning, pattern recognition, rule induction, tree  
Activity Percentile: 0 Activity Ranking: 0 Registered: 20110225 15:11 
Sparse group lasso [MOVED TO GITHUB]  Algorithms for solving sparse group lasso optimization problems. [MOVED TO GITHUB] https://github.com/vincentdk  
Tags: sparse group lasso, group lasso, lasso, Bioinformatics, Biostatistics, Classification, Machine Learning, Multivariate Analysis, Multivariate Regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110228 13:48 
Tools for Uplift Modeling  The R Package tools4uplift integrates some tools for exploring and modeling uplift. The content can be separated into the following steps of statistical modeling: categorization, visualization, feature engineering, feature selection and model validation.  
Tags: Uplift, LASSO, Classification, Categorization, Visualization  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20180831 21:23 
bootFS  bootFS is a convenient wrapper to multiple methods for twoclass or multiclass classification and feature selection in highthroughput omicsdata. It is designed to translate individual feature sets into biologically meaningful and robust biomarkers.  
Tags: Cancer, Classification, classification, feature selection  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120912 10:13 
likelihoodbased image id code  Computerassisted method for assigning animal ids to a database of images using phenotypic measurements extracted from each image. Method is based on likelihood theory, and can handle multiple sources of error inherit in image identification.  
Tags: image analysis, photograph, matching, Animal, Classification, likelihood  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130315 14:51 
missForest  The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an outofbag imputation error estimate.  
Tags: imputation, random forest, missing, missing data, missing values, missingness, outofbag, Bioinformatics, Classification, Multivariate Regression, Multivariate Techniques, R  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110518 08:28 
penalizedSVM  Feature selection for SVM classification in high dimensions using penalty functions L1, SCAD, Elastic Net (L1+L2) and Elastic SCAD (SCAD+L2) SVM. Choice of datadependent tuning parameters: beside the standard fixed grid an interval search is implemented  
Tags: Classification, feature selection, machine learning, tuning parameters, penalty functions, high dimentional data, low sample size high dimensional data, Bioinformatics, Machine Learning  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120619 15:40 
plsgenomics: PLS analyses for genomics  This package provides routines for PLSbased genomic analyses. It implements PLS methods for classification with microarray and Next Generation Sequencing data, prediction of transcription factor activities from combined ChIPchip analysis.  
Tags: Multivariate, High Dimension, PLS, Sparse PLS, MGSIM, Prediction of Transcription Factor Activities, Classification, Logistic Regression, Compression, Variables Selection  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20141030 14:27 
softclassval  softclassval provides classifier performance measures such as sensitivity and specifictity for soft classification (i.e. reference labels and/or classifier output can take any class membership value between 0 and 1).  
Tags: performance, classification, validation, partial class membership, fuzzy numbers, sensitivity, specificity, positive predictive value, negative predictive value, Classification, R, accuracy  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20100916 20:36 
species delimitation in oysters  The aim of this project is to make clear oyster phylogeny and systematics using both the MrBayes and the BEAST/GMYC analyses based on multigene sequence data.  
Tags: Bayesian, Animal, Classification, Sequence analysis, Phylogeny, Tree  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120502 12:23 
umx: A helper library for SEM in OpenMx  umx provides functions making it easy to build, run, modify, and report the results of Structural Equation Models (SEM) using OpenMx. Examples include setting start values: umxStart(); labels: umxLabel(); and reporting; umxSummary().  
Tags: OpenMx, SEM, SemTools, Structural Equation Modelling, Bioinformatics, Classification, Clustering, Multivariate Analysis, Multivariate Regression, Numeric Computation, R, matrix manipulation, missing data, optimization  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130828 13:52 