Software Map

Tag cloud | Project Tree | Project List


ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

19 projects in result set.
Applied Predictive Modeling - The package is an R companion to the Springer book "Applied Predictive Modeling". It contains several functions and data sets used in the text, as well as R scripts to re-create the analyses in each chapter.
Tags: Classification, Machine Learning, Machine learning, Regression, classification, machine learning, regression
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-02-08 18:59

Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data.
Tags: RNA, SHAPE, Bioinformatics & Biostatistics, Classification, machine learning

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-09-02 17:28

DiagnosisMed - DiagnosisMed is a package to analyze data from diagnostic test accuracy research evaluating health conditions.
Tags: Classification, classification

Activity Percentile: 39
Activity Ranking: 24
Registered: 2008-09-19 23:16

ExactSampling - ExactSampling is an R package for the exact cross-validataion for kNN, regression and bootstrap.
Tags: Classification, Regression, bootstrapping, classification
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-01-15 12:59

Fast- and Frugal Trees [early alpha!] - A package for the analysis of Fast- and Frugal trees, simple classification trees with a simplistic structure. Create FF-trees manually, or via induction through bruteforce/chasing/monte carlo. ATTENTION : PRE-ALPHA STAGE.
Tags: Fast, Frugal, Tree, Classification, Fit, Clustering, R, classification, data mining, model evaluation
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-10-07 10:23

Hierarchical RandomForest - An R package that runs randomForest as a local classifier at each parent node of a pre-defined tree-like class hierarchy.
Tags: Class Hierarchy, habitat, land-cover, land-use, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, out-of-bag, random forest
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-01-15 14:20

Hyper-g Priors for GAM selection - This R-package implements objective Bayesian model selection with penalised splines, using a so-called hyper-g prior for the parameters in the generalised additive model.
Tags: variable selection, objective Bayes, Bayesian, Classification, generalized linear models, marginal likelihood, model comparison, multiplicity, multivariate, semiparametric model, spline

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-08-11 09:12

Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.
Tags: Bioinformatics, Classification, Clustering, Fuzzy Sets, Graphical model, Machine Learning, Machine learning, Multivariate Analysis, Multivariate Techniques, Whole-genome, classification, clustering, copula, machine learning, mixed model, multivariate statistics, parametric model, mixture model

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-05-10 07:45

Predictive Modelling Markup Language - Export various models as Predictive Modelling Markup Language (PMML).
Tags: Artificial Neural Network, Boost, Classification, Clustering, Machine Learning, R
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-01-28 09:12

Rule-Based Models - This project contains GPL versions of Quinlan's C5.0 and Cubist models.
Tags: Classification, Machine Learning, boosting, classification, machine learning, pattern recognition, rule induction, tree

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-25 15:11

Sparse group lasso [MOVED TO GITHUB] - Algorithms for solving sparse group lasso optimization problems. [MOVED TO GITHUB] https://github.com/vincent-dk
Tags: sparse group lasso, group lasso, lasso, Bioinformatics, Biostatistics, Classification, Machine Learning, Multivariate Analysis, Multivariate Regression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-28 13:48

bootFS - bootFS is a convenient wrapper to multiple methods for two-class or multi-class classification and feature selection in high-throughput omics-data. It is designed to translate individual feature sets into biologically meaningful and robust biomarkers.
Tags: Cancer, Classification, classification, feature selection

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-09-12 10:13

likelihood-based image id code - Computer-assisted method for assigning animal ids to a database of images using phenotypic measurements extracted from each image. Method is based on likelihood theory, and can handle multiple sources of error inherit in image identification.
Tags: image analysis, photograph, matching, Animal, Classification, likelihood

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-03-15 14:51

missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate.
Tags: imputation, random forest, missing, missing data, missing values, missingness, out-of-bag, Bioinformatics, Classification, Multivariate Regression, Multivariate Techniques, R

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-05-18 08:28

penalizedSVM - Feature selection for SVM classification in high dimensions using penalty functions L1, SCAD, Elastic Net (L1+L2) and Elastic SCAD (SCAD+L2) SVM. Choice of data-dependent tuning parameters: beside the standard fixed grid an interval search is implemented
Tags: Classification, feature selection, machine learning, tuning parameters, penalty functions, high dimentional data, low sample size high dimensional data, Bioinformatics, Machine Learning
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-06-19 15:40

plsgenomics: PLS analyses for genomics - This package provides routines for PLS-based genomic analyses. It implements PLS methods for classification with microarray and Next Generation Sequencing data, prediction of transcription factor activities from combined ChIP-chip analysis.
Tags: Multivariate, High Dimension, PLS, Sparse PLS, MGSIM, Prediction of Transcription Factor Activities, Classification, Logistic Regression, Compression, Variables Selection

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-10-30 14:27

softclassval - softclassval provides classifier performance measures such as sensitivity and specifictity for soft classification (i.e. reference labels and/or classifier output can take any class membership value between 0 and 1).
Tags: performance, classification, validation, partial class membership, fuzzy numbers, sensitivity, specificity, positive predictive value, negative predictive value, Classification, R, accuracy
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2010-09-16 20:36

species delimitation in oysters - The aim of this project is to make clear oyster phylogeny and systematics using both the MrBayes and the BEAST/GMYC analyses based on multigene sequence data.
Tags: Bayesian, Animal, Classification, Sequence analysis, Phylogeny, Tree

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-05-02 12:23

umx: A helper library for SEM in OpenMx - umx provides functions making it easy to build, run, modify, and report the results of Structural Equation Models (SEM) using OpenMx. Examples include setting start values: umxStart(); labels: umxLabel(); and reporting; umxSummary().
Tags: OpenMx, SEM, SemTools, Structural Equation Modelling, Bioinformatics, Classification, Clustering, Multivariate Analysis, Multivariate Regression, Numeric Computation, R, matrix manipulation, missing data, optimization

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-08-28 13:52

Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge