Software Map
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ANOVA Artificial Neural Network Bayesian Bioinformatics C++ CCA Cancer Chemoinformatics Classification Clustering Copy number variant Copynumber DNA Ecology Finance GUI Genetic Algorithms Genetics Graphical User Interface HPC LaTeX Machine Learning Machine learning Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Normalization ODE Phylogeny R R-Forge Rcmdr Regression Sequence analysis Sweave Time series Visualization Whole-genome analytics beta diversity biostatistics break detection categorical change detection classification clustering community ecology copula data mining database datasets dependence differential equations disease mapping dissimilarity distance distribution diagnostics distributions diversity dynamic systems ecological models ecology environmetrics finance gene expression generalized linear models graphics high dimentional data inference likelihood linear programming longitudinal data machine learning marginal likelihood meta-analysis microarray microarray experiment mixed effect models mixed integer programming mixed model model comparison model estimation model selection model specification movement multivariate multivariate statistics nonlinear equations nonlinear models nonlinear programming nonparametric optimization ordination parametric model pattern recognition phylogeny plotting political analysis psychology raster regression remote sensing reporting resampling methods robust statistics sampling semiparametric model sequence analysis simulation social networks soil spatial spatial autocorrelation spatial classes spatial data spatial econometrics spatial methods spatial point patterns spatial regression spatio-temporal species distribution models spline statistical education survival teaching text mining time series trajectory trend analysis visualization
5 projects in result set.
| Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations | |
| Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate | |
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Activity Percentile: 0 Activity Ranking: 0 Registered: 2011-02-02 00:51 |
| Joint segmentation - This package implements functions to quickly segment multivariate signals into piecewise constant profiles. Typical application: joint segmentation of DNA copy number signals obtained from Single Nucleotide Polymorphism microarrays in cancer studies. | |
| Tags: Bioinformatics, CNV, Cancer, Copynumber, biostatistics, break detection, high dimentional data | |
| This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0 Activity Ranking: 0 Registered: 2013-01-04 20:37 |
| Parent-specific DNA copy numbers (abo) - Paired PSCBS: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation (CBS). Packages in this project: PSCBS. | |
| Tags: Cancer, Copynumber, DNA, Genetics, QC, SNP, bioinformatics, segmentation | |
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Activity Percentile: 0 Activity Ranking: 0 Registered: 2009-10-20 01:21 |
| Patchwork - Allele-specific Copy-number analysis for whole-genome sequenced data in CompleteGenomics or BAM format. | |
| Tags: Copynumber, Whole-genome, Cancer, R, Visualization, Bioinformatics | |
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Activity Percentile: 70 Activity Ranking: 38 Registered: 2011-10-31 13:53 |
| bootFS - The bootFS package is a convenient wrapper to multiple approaches for two-class classification and feature selection in high-throughput omics-data. It is designed to translate individual feature sets into biologically meaningful and robust biomarkers. | |
| Tags: Cancer, Classification, classification, feature selection | |
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Activity Percentile: 0 Activity Ranking: 0 Registered: 2012-09-12 10:13 |
