# Software Map

**Tag cloud | Project Tree | Project List**

ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models stochastic processes survival teaching text mining time series visualization

**4**projects in result set.

Fast kernel change-point procedure - This package implements the Kernseg procedure described in the paper "New efficient algorithms for multiple change-point detection with kernels (A. Celisse, G. Marot, M. Pierre-Jean, G. Rigaill) available at https://arxiv.org/abs/1710.04556 | |

Tags: reproducing kernel, Bioinformatics & Biostatistics, Biostatistics, CNV, Copy number variant, Copynumber, Statistics, Time series, bioinformatics, biostatistics, break detection, breakpoint, change detection, change point, changepoint, dynamic programming, machine learning, model selection, multivariate analysis, multivariate statistics, nonparametric, segmentation, time series | |

This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0Activity Ranking: 0Registered: 2017-12-18 14:11 |

Joint segmentation [MOVED TO GITHUB] - This package implements functions to quickly segment multivariate signals into piecewise constant profiles. Typical application: joint segmentation of DNA copy number signals obtained from Single Nucleotide Polymorphism microarrays in cancer studies. | |

Tags: Bioinformatics, CNV, Cancer, Copynumber, biostatistics, break detection, high dimentional data | |

This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0Activity Ranking: 0Registered: 2013-01-04 20:37 |

Piet - This package provides some segmentation tools, using fused lasso, group fused lasso and generalized fused lasso (GFL), for analysis of individual or multiple sequences of CNV data. | |

Tags: Copy number variant, CNV, fused lasso, group fused lasso, MM algorithm | |

This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0Activity Ranking: 0Registered: 2012-03-12 12:11 |

plumbCNV: [see github: nicholasjcooper] - It has been shown that a comprehensive quality control battery for Log-R-Ratio intensity data is needed to reduce the high false positive rate for rare CNV detection [Shtir et al, 2013]. PlumbCNV is an R package that automates this QC pipeline. | |

Tags: CNV, CNP, SNP, QC, plumbCNV, PCA, bigmemory, bigalgebra, plink, penncnv, R, Copy number variant, microarray, illumina, affy | |

This project has not yet categorized itself in the Trove Software Map | Activity Percentile: 0Activity Ranking: 0Registered: 2013-02-07 14:22 |