Software Map
Tag cloud  Project Tree  Project List
ANOVA Artificial Neural Network Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GDAL GUI Genetic Algorithms Genetics Graphical User Interface HPC Machine Learning Machine learning Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Regression Sequence analysis Time series Visualization Wholegenome animal beta diversity bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dependence differential equations dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics educational tool environmetrics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming longitudinal data machine learning marginal likelihood microarray missing data missing values mixed effect models mixed integer programming mixed model model model comparison model estimation model selection model specification movement multivariate multivariate regression multivariate statistics network nonparametrics nonlinear equations nonlinear models nonparametric optimization ordination parametric model pattern recognition permutation tests phylogeny plotting political analysis population genetics prediction psychology raster regression remote sensing reporting resampling methods robust robust statistics sampling simulation social network analysis social networks soil spatial spatial autocorrelation spatial classes spatial data spatial econometrics spatial methods spatial operators spatial point patterns spatial regression spatiotemporal species distribution models spline statistical education survival taxonomic diversity teaching text mining time series trajectory trend analysis visualization
16 projects in result set.
ANN  This package provides a feedforward Artificial Neural Network (ANN) optimized by Genetic Algorithm (GA).  
Tags: Artificial Neural Network, Machine Learning, C++, Finance, Genetic Algorithms, R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20111209 18:43 
An R wrapper for PostgreSQL's libpq  This package provides easy access to advanced features of a PostgreSQL database. Key features include simple management of database cursors and asynchronous query processing, as well as R object serialization to and from a PostgreSQL database.  
Tags: C++, PostgreSQL, database  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140630 17:00 
Boost C++ Template Library Project  Boost provides free peerreviewed portable C++ source libraries implemented mostly as templates. We place a subset of them in this package as a more efficient distribution system for CRAN.  
Tags: Boost, C++, library, libraries, programming  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120902 22:26 
CNAV  A hidden Markov model approach is used to infer frequencies and haplotype phases of genotypes containing joint allelic and copynumber variation to be used in association studies.  
Tags: Markov model, serial tempering, Gibbs sampling, Bayesian, Bioinformatics, Boost, C++, Genetics, bioinformatics, biostatistics, sampling  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 68 Activity Ranking: 35 Registered: 20130508 14:18 
Clusterwise Effect Regression  This software implements an algorithm that proposes variable clustering within high dimensional linear and probit regression models. The estimation strategy is based on mixed Gibbs Sampling and Stochastic EM algorithm.  
Tags: C++, Clustering, biostatistics, high dimentional data, multivariate regression, regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130820 09:47 
Funclustering  This project is for creating an R package which proposes a modelbased clustering algorithm for multivariate functional data. The package perform also functional PCA for univariate or multivariate functional data with differents weigths for each curves.  
Tags: functional data, clustering, multivariate functional pca, EM, C++, Clustering, functional data analysis  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130805 16:38 
Low Rank Gaussian Process Regression  Fit a Low Rank Gaussian Process Regression / Linear Mixed Model for large datasets. These models are widely used in statistical genetics as a test of association while correcting for the confounding effects of kinship and population structure.  
Tags: C++, Genetics, high performance computing, R, Regression, parallel computing  

Activity Percentile: 78 Activity Ranking: 25 Registered: 20131219 15:12 
MPAgenomics  This package contains an implementation of the lars algorithm for the lasso and fusion penalization. It works even if the number of covariate is greater than the number of individuals.  
Tags: lasso, lars, sparse linear model, C++, genomic, Bioinformatics, Multivariate Analysis, Multivariate Regression, high dimentional data, low sample size high dimensional data, penalized regression  

Activity Percentile: 79 Activity Ranking: 24 Registered: 20130418 16:20 
Markov decision processes (MDPs) in R  Create and optimize MDPs with discrete time steps and state space. Both normal MDPs and hierarchical MDPs can be considered.  
Tags: markov, optimization, stochastic, C++  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20090608 12:06 
RHmm  Simulations and estimations of discrete, univariate or multivariate gaussian, mixture of univariate or multivariate gaussian hidden Markov models.  
Tags: C++, R  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20071022 08:05 
Rcpp  Seamless R and C++ Integration  The Rcpp package provides a C++ library which facilitates the integration of R and C++. R data types (SEXP) are matched to C++ objects in a class hierarchy. All R types are supported and each type is mapped to a dedicated class.  
Tags: C++, R, library  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20080301 16:33 
RcppProgress  This package allows to display a progress bar in the R console for long running computations taking place in c++ code, and provides support for interrupting those computations even in a multithreaded code  
Tags: C++, package development  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130507 16:44 
abernethy reliability methods  Implementation of functions supporting reliability analyis methods presented in "The New Weibull Handbook" by Dr. Robert B. Abernethy.  
Tags: Reliability, C++, R, Regression, Weibull, competing risks models, distribution diagnostics, likelihood, lognormal, optimization, parametric model, quantile regression, regression, sampling, survival, visualization  

Activity Percentile: 43 Activity Ranking: 62 Registered: 20121230 16:40 
cgen  Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp  
Tags: C++, Genetics, mixed model, openmp, parallel computing, Bioinformatics, Bioinformatics & Biostatistics, Biostatistics, Gibbs sampling, Regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 51 Activity Ranking: 53 Registered: 20130529 18:34 
phylobase  Defining the basic S4 classes and methods for representing and manipulating phylogenetic trees and data in R.  
Tags: C++, Phylogeny  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20071214 19:17 
skycalc: Calculating the Sky Events  Calculating the Sky Events based on AAplus (Astronomical Algorithms), and generating figures that can be used in Almanacs.  
Tags: astronomy, C++  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140108 13:34 