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84 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4> <5>
AFLP - A package for the normalisation on classification of AFLP (Amplification Fragment Length Polymorphism) data.
Tags: Bioinformatics, DNA, Normalization, classification, diversity, ecology, taxonomic diversity

Activity Percentile: 0
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Registered: 2011-03-02 11:24

AcceptABEL - A package for controlling false-positives rate (FPR) in GWAS studies. The control is achieved via assessing marker-specific genomic inflation factor.
Tags: Bioinformatics, Confounders, Confounding, DNA, Genetics

Activity Percentile: 0
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Registered: 2013-02-26 08:43

BVSflex - The BVSflex package implements efficient Bayesian variable selection models for high-dimensional input data. A flexible selection prior allows the incorporation of additional information, e.g. a second data source including all sources of variation.
Tags: Bayesian, variable selection, Bioinformatics, logistic, integrative
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2013-11-13 11:35

Bayesian AuTomated Metabolite Analyser - Bayesian AuTomated Metabolite Analyser for NMR data (BATMAN). A package for estimating metabolite concentrations from Nuclear Magnetic Resonance spectral data using a specialised MCMC algorithm.
Tags: NMR, Metabolomics, Bayesian, Bioinformatics, Chemoinformatics

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Registered: 2011-03-10 13:46

Benchmarking genomic data integration - Comparison pipeline for multi-platform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, R-Forge, Whole-genome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate

Activity Percentile: 0
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Registered: 2011-02-02 00:51

Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
Tags: Bioinformatics, Copy number variant, Copynumber, break detection, change detection

Activity Percentile: 0
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Registered: 2012-11-27 16:51

CNAV - A hidden Markov model approach is used to infer frequencies and haplotype phases of genotypes containing joint allelic and copy-number variation to be used in association studies.
Tags: Markov model, serial tempering, Gibbs sampling, Bayesian, Bioinformatics, Boost, C++, Genetics, bioinformatics, biostatistics, sampling
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2013-05-08 14:18

CandidateBacon - The CandidateBacon package is a simple tool that provides candidate gene validation and ensures that the proposed interaction networks are not statistical artefacts.
Tags: Bioinformatics, gene networks, genetic interaction, network enrichment analysis, social network analysis
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2013-10-31 10:11

Class Prediction - A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize training-testing regimens and cross-validation schemes.
Tags: Bioinformatics, Gene expression, Genetic Algorithms, Machine Learning, Machine learning, Multivariate Regression, Self-Organizing Map, bioinformatics, classification, cross-validation, gene expression, genetic algorithms, machine learning, model, prediction, validation

Activity Percentile: 0
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Registered: 2014-02-03 16:15

Coalescent for compartmental models - This package provides methods to compute the likelihood of a gene genealogy using coalescent models for populations with complex demographic histories.
Tags: population genetics, epidemiology, infectious disease, Bioinformatics, Ecology, Genetics, Phylogeny
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2013-01-09 23:07

Corbi - A collection of bioinformatics tools for general purposes such as network query, protein structure alignment, gene expression analysis.
Tags: Bioinformatics, CRF

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Registered: 2011-09-26 05:04

CoreArray - The package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information.
Tags: Bioinformatics, SNP, genetics, genomics, relatedness

Activity Percentile: 0
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Registered: 2014-05-31 04:36

DiscreteMTP Package - Procedures to adjust P-values in multiple testing where the test statistics are discrete distributed. The procedures exploit the discreteness to get a larger number of rejected tests while controlling the same FDR level.
Tags: Multiple Comparisons, Bioinformatics, DNA, false discovery rate, microarray

Activity Percentile: 0
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Registered: 2012-04-03 11:32

EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
Tags: Abundance, Bioinformatics, Bioinformatics & Biostatistics, Count estimates, Ecological monitoring, Ecology, Environmental monitoring, Metagenomic, biodiversity, biodiversity estimation, bioenv, community ecology, diversity, species accumulation, species distributions

Activity Percentile: 0
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Registered: 2016-10-08 19:20

Evolutionary Biology in R - Active development of this and my other package has been migrated to github http://coleoguy.github.io/software.html
Tags: Bioinformatics, Genetics, Phylogeny, Regression, data mining, education, educational tool, genetics, genomic, phylogeny, population genetics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2013-10-11 20:03

Evolutionary models in R - Evolutionary models in R.
Tags: Bioinformatics, Phylogeny, sequence analysis
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2011-05-08 21:37

Eye movement analysis package - The emov package contains saccade and fixation detection algorithms to analyze eye movements.
Tags: Bioinformatics, biostatistics

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Registered: 2010-10-24 13:21

Fast Regularized Canonical Correlation - This R package implements the Fast Regularized Canonical Correlation method.
Tags: Bioinformatics, data mining, high dimentional data, regularization
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2012-09-10 18:11

Finite Mixure of AFT and FMR models - FMRS package provides estimation and variable selection in Finite Mixture of Accelerated Failure Time Regression (FMAFTR) and Finite Mixture of Regression (FMR) models with a large number of covariates and/or right censoring and heterogeneous structure.
Tags: Bioinformatics, Biostatistics, C++, Cancer, Medical Science, Mixture, Next generation Sequencing, R, Regression, Statistics, lasso, model estimation, model selection, penalized regression, regularization, survival, tuning parameters, variable selection

Activity Percentile: 0
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Registered: 2016-03-07 02:31

GWASBinTests - Bin-based analysis of genome-wide association studies Given an a priori partitioning of the genome into regions termed bins, GWASBinTests can compute p-values (and FDRs) of several association tests.
Tags: Bioinformatics, Whole-genome

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-10-07 17:59

84 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4> <5>
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