Software Map
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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
35 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
SciencesPo  Provide functions for analyzing political behavior data, including measures of political fragmentation, seat apportionment, and options for small data visualization.  
Tags: electoral systems, effective number of parties, anonymize, describe data, descriptive stats, political science, Bayesian, R, distributions  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130102 11:44 
SpatioTemporal Bayesian Modelling  This package is suitable to fit, spatially predict and temporally forecast environmental spacetime data using several recently developed Bayesian methods.  
Tags: Bayesian, spatiotemporal  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120613 03:11 
Tools for WholeGenome Prediction  Statistical Tools for WholeGenome Prediction of Complex Traits and Diseases  
Tags: Bayesian, Genetics  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121112 15:15 
Visual Inference Software Development  Convenient and readily available software is lacking for visualizing the process of statistical inference for various applications in statistical practice. The "logic" of inference, should be clearly depicted, if possible.  
Tags: Bayesian, likelihood, marginal likelihood, simulation, visualization  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120411 12:56 
Yuima Project  The project for simulation and inference of multidimensional stochastic differential equations.  
Tags: finance, stochastic processes, stochastic differential equation, estimation, time series, model selection, change point, Bayesian, Finance, MCMC, Monte Carlo, Statistics, change detection, changepoint, dynamic systems, inference, likelihood, option, option pricing, simulation, simulations, statistical inference, statistics, stochastic, stochastic differential equations  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20090928 11:24 
addendum  Utility functions that should have been in R: easy glmnet, pretty graphing and swift debugging and profiling.  
Tags: Bayesian, Multivariate Regression, R, likelihood, marginal model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110617 13:35 
amen  The "amen" package package computes Bayesian estimates for additive and multiplicative effects (AME) models for networks and relational data.  
Tags: Bayesian, Regression, network, social network analysis, social networks  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130404 21:47 
blme  Bayesian MixedEffects Models  Maximum a posteriori estimation for linear and generalized linear mixedeffects models in a Bayesian setting. Extends lme4 by Douglas Bates, Martin Maechler, Ben Bolker, and Steve Walker.  
Tags: Bayesian, lme4, mixed effect models  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121121 23:16 
dcr  Data Cloning in R  Data cloning (DC) uses Bayesian MCMC to make maximum likelihood inference of complex hierarchical models. The bundle includes basic infrastructure for DC with parallel computing support, and more specialized packages for ecology.  
Tags: data cloning, likelihood, optimization, Bayesian, ecology, mixed model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20090817 16:25 
diseasemapping  Geostatistics with the geostatsp package, disease mapping for areal data with diseasemapping, and basic mapping utilities with mapmisc.  
Tags: Bayesian, disease mapping, geostatistics, spatial, spatial autocorrelation, spatial data, spatial methods, spatial point patterns, mapping  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20081202 16:49 
eefAnalytics  eefAnalytics package provides tools for analysing education trials using different methods. This package also provides tools for exploring Complier Average Causal Effect (CACE).  
Tags: Education, Trials, SRT, MST, CRT, Bayesian, OLS, MLM  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20151105 08:38 
matchingMarkets  This package implements a structural estimator to correct for the sample selection bias from observed outcomes in matching markets. It also contains R code for matching algorithms for college admissions, stable roommates and house allocation problems.  
Tags: econometrics, matching algorithms, stable matching, sample selection, Bayesian, finance, optimization  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20140521 15:16 
pCalibrate: Calibration of Pvalues  pCalibrate implements transformations of Pvalues to the smallest possible Bayes factor within the specified class of alternative hypotheses. It covers several common testing scenarios such as ztests, ttests and likelihood ratio tests.  
Tags: Bayesian  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20171102 09:48 
rGeoJAGS  An R interface for use of the GeoJAGS module within JAGS Bayesian analysis software. This extends JAGS through the inclusion of families of Gaussian Markov Random Field models. Functions to format spatial data for analysis within BUGS are also included  
Tags: GMRF, species distribution models, Ecology, Bayesian, spatial regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150206 13:03 
species delimitation in oysters  The aim of this project is to make clear oyster phylogeny and systematics using both the MrBayes and the BEAST/GMYC analyses based on multigene sequence data.  
Tags: Bayesian, Animal, Classification, Sequence analysis, Phylogeny, Tree  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120502 12:23 
35 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>