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Fri Mar 4 09:23:21 2011 UTC (6 years, 9 months ago) by tdhock
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letter and cv
\documentclass[11pt,a4paper]{article}
\usepackage{times,hyperref}
\usepackage{fullpage}
\usepackage{nopageno}

\begin{document}

\begin{tabular}{rcl}
{\Large Toby Dylan Hocking} & nationality: American &
phone: +33 1 39 63 54 99
\\
email: toby.hocking AT inria.fr & birth: 17 March 1984& 
web: \url{http://cbio.ensmp.fr/~thocking}
\end{tabular} 

\subsection*{Publications, posters, talks}
\begin{itemize}
\item ``Sustainable package development using documentation generation,'' talk 21 October 2010 for semin-r, the Paris R user group.
\item
\href{http://www.plosone.org/article/info\%3Adoi\%2F10.1371\%2Fjournal.pone.0011913}{Gautier M, {\bf Hocking~TD}, Foulley JL.
A Bayesian Outlier Criterion to Detect SNPs under Selection in Large
Data Sets, \emph{PLoS ONE} 5(8): e11913 (2010).}
\item ``Visualizing
multivariate data using lattice and direct labels,'' talk 15 October
2009 for semin-r, the Paris R user group.
\item Sublogo dendrograms:
visualizing correlation in biological sequence motifs, poster
presented at
\href{http://www.agrocampus-ouest.fr/math/useR-2009/}{useR! 2009}.
\item \href{http://www.ncbi.nlm.nih.gov/pubmed/18500334}{Doyon~Y, McCammon~JM, Miller~JC, Faraji~F, Ngo~C,
Katibah~GE, Amora~R, {\bf Hocking~TD}, Zhang~L, \mbox{Rebar~EJ}, Gregory~PD,
Urnov~FD, Amacher~SL. Heritable targeted gene disruption in zebrafish
using designed zinc-finger nucleases, \emph{Nature~Biotechnology}
26, 702-708 (2008).
}
\end{itemize}

\subsection*{Professional and research experience} \label{profexp}
\begin{description}

\newcommand{\job}[4]{\item[#1, #2]\hrulefill\ #3 \\ #4}

\job{Free software developer}{SourceForge.net,
  R-Forge.R-project.org}{since November 2007}{
  - \href{http://sf.net/projects/django-dataplot/}{Django-dataplot} for
  statistical graphics on a web site using R, Python, and
  Django.\\ 
- \href{http://sf.net/projects/gpsdb/}{GPSDB}, a Python
  program for making websites for GPS data, and visualizing them using
  Google Maps.\\
- \href{http://inlinedocs.r-forge.r-project.org/}{inlinedocs} R package for documentation generation based on comments in R code.\\
- \href{http://directlabels.r-forge.r-project.org}{directlabels} R package for automatic direct labeling of multicolor plots.\\
- \href{http://nicholsonppp.r-forge.r-project.org/}{nicholsonppp} R package for fitting a Bayesian model of evolution.\\
- \href{http://sublogo.r-forge.r-project.org/}{sublogo} R package for plotting sublogo dendrograms, for visualizing biological sequence alignment data.\\
- \href{https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14518}{Patched the R interpreter} to support named capture in regular expressions using the PCRE library.
}

\job{Research assistant}{Sangamo BioSciences, Richmond, CA}{June 2006
-- August 2008}{
  Performed biochemical assays to determine sequence specificity of
  DNA-binding proteins.  \\ 
  Designed protein linkers for optimal
  nuclease activity and specificity. \\ 
  Deployed an internal web
  database for visualizing and comparing proteins and experiments.
}

\job{General manager}{Open Computing Facility, Berkeley, CA}{October 2005 -- May 2006}{
Managed finances, personnel, and public relations for this student computer
center of over 10,000 users.  \\
Installed and maintained software packages and helped users with
technical difficulties.
}

\end{description}

\subsection*{Programming skills}
Fortran, C, C++, Perl, Python, regular expressions, Emacs-Lisp, R,
SAS, HTML, SQL, PHP, CSS, \LaTeX, Subversion, Mercurial, Debian
systems administration.

\subsection*{Language skills: English (mother tongue), French (fluent)}

\subsection*{Education}
\begin{description}
\item[Ecole Normale Sup\'erieure, Paris, France, October 2009 -- 2012]
Doctoral research in statistical learning applied to computer vision
and bioinformatics with advisors Francis Bach and Jean-Philippe Vert.
\item[Pierre and Marie Curie University, Paris, France, September
2009] Masters of statistics with internship at INRA in
\href{http://nicholsonppp.r-forge.r-project.org/}{Bayesian statistics
applied to models of domestic animal evolution} with advisors Mathieu
Gautier and Jean-Louis Foulley.
\item[UC Berkeley, Spring 2006] Bachelors in molecular and cell
  biology and statistics. Honors thesis with advisor Terry Speed on
  chromosomal copy number analysis using SNP microarrays.
\end{description}

\subsection*{Hobbies}
Playing saxophone and clarinet (since 1994), playing soccer (since 2006),
bicycle riding and touring (since 2007).

\end{document}

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