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Revision 356 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Apr 9 15:39:09 2012 UTC (7 years, 3 months ago) by tdhock
File length: 2988 byte(s)
Diff to previous 312
debugging CRAN crossref err

Revision 312 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Jan 13 09:22:02 2012 UTC (7 years, 6 months ago) by tdhock
File length: 2926 byte(s)
Diff to previous 311
usage line breaks

Revision 311 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Dec 7 19:39:34 2011 UTC (7 years, 7 months ago) by markus
File length: 2775 byte(s)
Diff to previous 308
package.skeleton.dx can now be told to exclude files matching a regular expression to avoid the situation where there would be no possibility to build the documentation because of some files that can not be handled yet.

Revision 308 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Oct 21 12:08:39 2011 UTC (7 years, 9 months ago) by tdhock
File length: 2721 byte(s)
Diff to previous 304
modify getSource, delete inlinedocExample to pass 2.14 checks

Revision 304 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jul 19 17:03:18 2011 UTC (8 years ago) by tdhock
File length: 2718 byte(s)
Diff to previous 291
doc usage line breaks, works under R-2.13.1

Revision 291 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jun 7 08:59:30 2011 UTC (8 years, 1 month ago) by tdhock
File length: 2719 byte(s)
Diff to previous 213
linebreak

Revision 213 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Mar 9 16:49:46 2011 UTC (8 years, 4 months ago) by kmpont
File length: 2718 byte(s)
Diff to previous 209
Options fix just introduced now correctly restores original settings

Revision 209 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Feb 25 08:15:10 2011 UTC (8 years, 4 months ago) by tdhock
File length: 2646 byte(s)
Diff to previous 201
doc updates

Revision 201 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Feb 18 15:34:51 2011 UTC (8 years, 5 months ago) by tdhock
File length: 2648 byte(s)
Diff to previous 163
doc updates

Revision 163 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Nov 16 12:06:29 2010 UTC (8 years, 8 months ago) by tdhock
File length: 2635 byte(s)
Diff to previous 147
kill.prefix.whitespace

Revision 147 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Oct 20 11:24:49 2010 UTC (8 years, 9 months ago) by tdhock
File length: 2627 byte(s)
Diff to previous 141
check pkg using R.home("bin")

Revision 141 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Oct 20 09:12:53 2010 UTC (8 years, 9 months ago) by tdhock
File length: 2564 byte(s)
Diff to previous 140
dont on.exit in an example

Revision 140 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Oct 19 23:24:01 2010 UTC (8 years, 9 months ago) by tdhock
File length: 2573 byte(s)
Diff to previous 137
do ex in tempdir

Revision 137 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Oct 19 22:36:28 2010 UTC (8 years, 9 months ago) by tdhock
File length: 2528 byte(s)
Diff to previous 125
new man pages for new parser stuff

Revision 125 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Sep 16 09:34:38 2010 UTC (8 years, 10 months ago) by tdhock
File length: 2478 byte(s)
Diff to previous 123
extended package.skeleton.dx example that also checks the silly package and verifies that there are no warnings

Revision 123 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Aug 30 09:19:39 2010 UTC (8 years, 10 months ago) by tomaschwutz
File length: 2273 byte(s)
Diff to previous 122
added alias inlinedocs to function package.skeleton.dx (to be displayed on ?inlinedocs)
added an example to package.skeleton.dx
added the silly package to inst directory, so that a package for examples is available at installation time 


Revision 122 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Sat Aug 28 21:36:48 2010 UTC (8 years, 10 months ago) by tomaschwutz
File length: 1575 byte(s)
Diff to previous 109
implemented Claudia's suggestion about the assignment function of example code to attribute ex:
added function inlinedocExample<- in file package.skeleton.dx.R with specifying the example already using this mechanism
added testfile attrExamples.R

in addition added suppressWarnings() around the call to package.skeleton, because it always gave a warning of non-exisiting package with my Windows version of R 10.1.

Revision 109 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Jun 7 08:42:15 2010 UTC (9 years, 1 month ago) by tdhock
File length: 1538 byte(s)
Diff to previous 108
extract.docs.file new functionality parses files independently

Revision 108 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed May 26 12:00:17 2010 UTC (9 years, 1 month ago) by phgrosjean
File length: 1541 byte(s)
Diff to previous 91
Several bugs corrections and improvements. See NEWS file
More tests temporary in /scratch for difficult cases

Revision 91 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon May 3 14:17:02 2010 UTC (9 years, 2 months ago) by tdhock
File length: 1311 byte(s)
Diff to previous 90
doc update after added new parser list feature

Revision 90 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon May 3 14:03:10 2010 UTC (9 years, 2 months ago) by tdhock
File length: 1339 byte(s)
Diff to previous 84
unix line endings

Revision 84 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Apr 22 10:11:18 2010 UTC (9 years, 3 months ago) by kmpont
File length: 1373 byte(s)
Diff to previous 75
Further fixes for S3 methods declared with setMethodS3

1) automatically generates \method{}{} markup which should be correct if
and only if the generic name is everything up to but not including the
first period in the function name. Thus this will not work properly if a
generic function has a name like "my.generic" so that the specific function
is "my.generic.my_type".

2) fix for behaviour of package.skeleton, which, as used within this
package, for a function "[[.Distribution" generates a file with name
"z[[.Distribution.Rd"

3) prints S3method calls suitable for inclusion in a NAMESPACE file

The mechanism depends on the parse of the source file picking up and
setting the "created" field to "setMethodS3". Something similar might work
for other ways of creating S3 generics, but I am not currently clear how to
pick those up reliably.

Revision 75 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Apr 12 09:30:28 2010 UTC (9 years, 3 months ago) by tdhock
File length: 1339 byte(s)
Diff to previous 70
docs update, passes r cmd check, upload to cran

Revision 70 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Jan 15 09:42:36 2010 UTC (9 years, 6 months ago) by kmpont
File length: 1442 byte(s)
Diff to previous 62
Completed experimental implementation for S3 classes using R.oo.

1) Search for comments preceding definition now uses parse on file
   insteadof grep via new method extract.file.parse. This works for more
   ways of defining values and does not require blank lines after
   definitions.

2) When an S3 generic is defined using setMethodS3:
a) the generic is documented with a copy of the inline documentation for the
   specific.
b) (Very experimental!) further definitions of the same generic inherit
   documentation from the first version defined in the same source file.
   The idea is to avoid repeating documentation when defining the generic
   repeatedly for an inheritance hierarchy.
   Thus if an argument is not documented, the documentation from the first
   version of the generic will be used. At present this applies to _all_
   documentation entries, but that may be reduced in the future.

3) Further minor tweaks:
a) fixes to work around package.skeleton issue: if a default argument
   contains a "%" character, then it should be escaped in the skeleton
   \usage, but is not, causing things to break nastily.
b) If documentation for an object contains an explicit title but no
   description, then the title is copied into the description in order
   to avoid warnings from the package checking process which requires
   description to be present. The idea here is to simplify generating
   documentation for small methods by reducing it to the bare minimum.

Revision 62 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Dec 8 15:00:47 2009 UTC (9 years, 7 months ago) by tdhock
File length: 1403 byte(s)
Diff to previous 60
update email address, add new extract pages

Revision 60 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Nov 30 18:05:13 2009 UTC (9 years, 7 months ago) by kmpont
File length: 1445 byte(s)
Diff to previous 57
First implementation of docs within S4 class definitions

Revision 57 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Nov 23 16:46:00 2009 UTC (9 years, 7 months ago) by kmpont
File length: 1462 byte(s)
Diff to previous 55
Initial implementation of 'extra' fields information via ##field<<

Revision 55 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Sun Nov 15 22:54:53 2009 UTC (9 years, 8 months ago) by tdhock
File length: 1406 byte(s)
Diff to previous 52
add directlabels test

Revision 52 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Nov 11 22:26:18 2009 UTC (9 years, 8 months ago) by tdhock
File length: 1406 byte(s)
Diff to previous 51
remove Rdversion lines, R-2.10

Revision 51 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Nov 11 15:38:23 2009 UTC (9 years, 8 months ago) by tdhock
File length: 1422 byte(s)
Diff to previous 35
update desc with keith as coauthor

Revision 35 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Aug 18 20:57:20 2009 UTC (9 years, 11 months ago) by tdhock
File length: 1385 byte(s)
Diff to previous 34
custom title allowed by commenting first line of function definition

Revision 34 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Aug 18 14:05:29 2009 UTC (9 years, 11 months ago) by tdhock
File length: 1380 byte(s)
Diff to previous 24
update docs for new interpretation of check parameter

Revision 24 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Aug 4 12:40:37 2009 UTC (9 years, 11 months ago) by tdhock
File length: 1192 byte(s)
Diff to previous 23
package.skeleton.dx default filepath .. bugfix, escape backslashes in comments, examples from test files

Revision 23 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Aug 3 15:37:42 2009 UTC (9 years, 11 months ago) by tdhock
File length: 1179 byte(s)
Diff to previous 12
first argument changed to pkgdir, on.exit added to package.skeleton.dx

Revision 12 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Sat Aug 1 07:01:02 2009 UTC (9 years, 11 months ago) by tdhock
File length: 1151 byte(s)
Diff to previous 7
support for check and chdir args for package.skeleton.dx

Revision 7 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Jul 31 15:11:15 2009 UTC (9 years, 11 months ago) by tdhock
File length: 927 byte(s)
Diff to previous 5
works with new find/replace mechanism

Revision 5 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Jul 31 09:56:58 2009 UTC (9 years, 11 months ago) by tdhock
File length: 1349 byte(s)
Diff to previous 4
author tag, switch statement, more comments

Revision 4 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Jul 30 18:39:50 2009 UTC (9 years, 11 months ago) by tdhock
File length: 1175 byte(s)
Diff to previous 3
deleted name argument, infer from DESCRIPTION file

Revision 3 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Jul 30 09:43:37 2009 UTC (9 years, 11 months ago) by tdhock
File length: 1362 byte(s)
Diff to previous 2
support for comments about function return values, resulting documentation passes R CMD check with no warnings

Revision 2 - (view) (download) (as text) (annotate) - [select for diffs]
Added Wed Jul 29 16:59:24 2009 UTC (9 years, 11 months ago) by tdhock
File length: 1474 byte(s)
First working version that passes checks successfully

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