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Revision 102 - Directory Listing
Modified Fri May 14 18:48:40 2010 UTC (9 years, 3 months ago) by tdhock
bugfix for return at end of function

Revision 101 - Directory Listing
Modified Tue May 4 06:57:58 2010 UTC (9 years, 3 months ago) by tdhock
cat sep

Revision 100 - Directory Listing
Modified Tue May 4 06:55:27 2010 UTC (9 years, 3 months ago) by tdhock
typo

Revision 99 - Directory Listing
Modified Mon May 3 18:31:40 2010 UTC (9 years, 3 months ago) by tdhock
update some docs

Revision 97 - Directory Listing
Modified Mon May 3 16:07:46 2010 UTC (9 years, 3 months ago) by tdhock
bugfix for returns in examples-after-comments module

Revision 96 - Directory Listing
Modified Mon May 3 15:57:03 2010 UTC (9 years, 3 months ago) by tdhock
examples-after-return gives value as well

Revision 95 - Directory Listing
Modified Mon May 3 14:22:42 2010 UTC (9 years, 3 months ago) by tdhock
collapse line

Revision 94 - Directory Listing
Modified Mon May 3 14:21:15 2010 UTC (9 years, 3 months ago) by tdhock
passes check 

Revision 93 - Directory Listing
Modified Mon May 3 14:18:47 2010 UTC (9 years, 3 months ago) by tdhock
forall operates on all docs instead of all objects (thus works for s4 classes as well)

Revision 92 - Directory Listing
Modified Mon May 3 14:17:37 2010 UTC (9 years, 3 months ago) by tdhock
use collate if it exists

Revision 91 - Directory Listing
Modified Mon May 3 14:17:02 2010 UTC (9 years, 3 months ago) by tdhock
doc update after added new parser list feature

Revision 90 - Directory Listing
Modified Mon May 3 14:03:10 2010 UTC (9 years, 3 months ago) by tdhock
unix line endings

Revision 89 - Directory Listing
Modified Mon May 3 13:01:06 2010 UTC (9 years, 3 months ago) by tdhock
define parsers as a list, allow configuration of parser list from project .inlinedocs.R or options()

Revision 88 - Directory Listing
Modified Mon May 3 09:13:38 2010 UTC (9 years, 3 months ago) by tdhock
add fermat-inline-ex, directlabels-inline-ex

Revision 87 - Directory Listing
Modified Sat May 1 12:21:27 2010 UTC (9 years, 3 months ago) by tdhock
restructure package.skeleton.dx to support modular parser list

Revision 86 - Directory Listing
Modified Fri Apr 30 12:30:34 2010 UTC (9 years, 3 months ago) by tomaschwutz
1) changed prefix to include tabs

2) added package sillyS3 to tests, to test generation of S3 comments

Revision 85 - Directory Listing
Modified Thu Apr 22 14:10:35 2010 UTC (9 years, 4 months ago) by tdhock
add fermat-inline-ex example

Revision 84 - Directory Listing
Modified Thu Apr 22 10:11:18 2010 UTC (9 years, 4 months ago) by kmpont
Further fixes for S3 methods declared with setMethodS3

1) automatically generates \method{}{} markup which should be correct if
and only if the generic name is everything up to but not including the
first period in the function name. Thus this will not work properly if a
generic function has a name like "my.generic" so that the specific function
is "my.generic.my_type".

2) fix for behaviour of package.skeleton, which, as used within this
package, for a function "[[.Distribution" generates a file with name
"z[[.Distribution.Rd"

3) prints S3method calls suitable for inclusion in a NAMESPACE file

The mechanism depends on the parse of the source file picking up and
setting the "created" field to "setMethodS3". Something similar might work
for other ways of creating S3 generics, but I am not currently clear how to
pick those up reliably.

Revision 83 - Directory Listing
Modified Tue Apr 20 13:53:13 2010 UTC (9 years, 4 months ago) by tomaschwutz
added example R file to test package indent

Revision 82 - Directory Listing
Modified Tue Apr 20 13:51:01 2010 UTC (9 years, 4 months ago) by tomaschwutz
added support for tabs and indented function arguments and ### comments, added new test package indent

Revision 81 - Directory Listing
Modified Mon Apr 19 10:02:10 2010 UTC (9 years, 4 months ago) by tdhock
version bump

Revision 80 - Directory Listing
Modified Mon Apr 19 08:49:24 2010 UTC (9 years, 4 months ago) by tdhock
Rout.save update before addition of thomas features

Revision 76 - Directory Listing
Modified Mon Apr 12 15:59:13 2010 UTC (9 years, 4 months ago) by tdhock
add fermat unit test

Revision 75 - Directory Listing
Modified Mon Apr 12 09:30:28 2010 UTC (9 years, 4 months ago) by tdhock
docs update, passes r cmd check, upload to cran

Revision 73 - Directory Listing
Modified Mon Mar 1 14:28:44 2010 UTC (9 years, 5 months ago) by tdhock
just ignore format field, causes too many problems

Revision 72 - Directory Listing
Modified Thu Feb 25 16:50:15 2010 UTC (9 years, 5 months ago) by tdhock
delete empty sections in Rd files

Revision 71 - Directory Listing
Modified Fri Jan 22 17:36:01 2010 UTC (9 years, 7 months ago) by tdhock
delete old files

Revision 70 - Directory Listing
Modified Fri Jan 15 09:42:36 2010 UTC (9 years, 7 months ago) by kmpont
Completed experimental implementation for S3 classes using R.oo.

1) Search for comments preceding definition now uses parse on file
   insteadof grep via new method extract.file.parse. This works for more
   ways of defining values and does not require blank lines after
   definitions.

2) When an S3 generic is defined using setMethodS3:
a) the generic is documented with a copy of the inline documentation for the
   specific.
b) (Very experimental!) further definitions of the same generic inherit
   documentation from the first version defined in the same source file.
   The idea is to avoid repeating documentation when defining the generic
   repeatedly for an inheritance hierarchy.
   Thus if an argument is not documented, the documentation from the first
   version of the generic will be used. At present this applies to _all_
   documentation entries, but that may be reduced in the future.

3) Further minor tweaks:
a) fixes to work around package.skeleton issue: if a default argument
   contains a "%" character, then it should be escaped in the skeleton
   \usage, but is not, causing things to break nastily.
b) If documentation for an object contains an explicit title but no
   description, then the title is copied into the description in order
   to avoid warnings from the package checking process which requires
   description to be present. The idea here is to simplify generating
   documentation for small methods by reducing it to the bare minimum.

Revision 69 - Directory Listing
Modified Mon Jan 11 18:13:14 2010 UTC (9 years, 7 months ago) by kmpont
First version working with R.oo class and method definitions.
Note: R.oo creates S3 generics freely - these still need a
little more thought to eliminate warnings and to avoid
repetitious documentation of class-specific versions.

Revision 68 - Directory Listing
Modified Thu Jan 7 15:56:05 2010 UTC (9 years, 7 months ago) by kmpont
Bug fix: when ... was used with ##<< argument documentation, it was
matching _any_ three character argument, which meant that ... was
documented repeatedly and the three character argument was
undocumented.

Also minor tweak so works with rare case when there are no ###
documentation lines.

Revision 67 - Directory Listing
Modified Thu Jan 7 10:31:00 2010 UTC (9 years, 7 months ago) by kmpont
Almost dummy commit to insert log message which got lost for version 66.

Version 66 fixed various matters to do with S4 classes:

1) Previous versions crashed looking for missing print.Rd when
   attempting to define a method for "print" generic for S4 classes, using
      setMethod("print" ...)
   Note that this was misconceived, as "print" does not seem to be
   generic for S4 classes.
2) When "show" generic is defined with setMethod("show" ...) an
   additional alias is defined in the class skeleton documentation.
   This revealed a problem with alias handling - multiple aliases from
   package.skeleton were all replaced by the aliases from the inline docs.
3) Class documentation extracted from setClass)("class.name" ...) now
   automatically includes "class.name" as an alias (default was only
   to have "class.name-class", which makes referencing from other
   documentation more clumsy.

Revision 66 - Directory Listing
Modified Thu Jan 7 10:12:28 2010 UTC (9 years, 7 months ago) by kmpont


Revision 65 - Directory Listing
Modified Fri Dec 11 14:48:30 2009 UTC (9 years, 8 months ago) by tdhock
erase curly braces from format section

Revision 64 - Directory Listing
Modified Thu Dec 10 14:57:31 2009 UTC (9 years, 8 months ago) by tdhock
add definition attribute to result of extract.docs

Revision 63 - Directory Listing
Modified Tue Dec 8 15:01:01 2009 UTC (9 years, 8 months ago) by tdhock
update new email

Revision 62 - Directory Listing
Modified Tue Dec 8 15:00:47 2009 UTC (9 years, 8 months ago) by tdhock
update email address, add new extract pages

Revision 60 - Directory Listing
Modified Mon Nov 30 18:05:13 2009 UTC (9 years, 8 months ago) by kmpont
First implementation of docs within S4 class definitions

Revision 59 - Directory Listing
Modified Thu Nov 26 16:45:50 2009 UTC (9 years, 8 months ago) by kmpont
Fix unit tests to use same file order on all locales

Revision 58 - Directory Listing
Modified Thu Nov 26 10:35:42 2009 UTC (9 years, 8 months ago) by tdhock
use prefix instead of hard re

Revision 57 - Directory Listing
Modified Mon Nov 23 16:46:00 2009 UTC (9 years, 8 months ago) by kmpont
Initial implementation of 'extra' fields information via ##field<<

Revision 56 - Directory Listing
Modified Wed Nov 18 09:31:49 2009 UTC (9 years, 9 months ago) by tdhock
code formatting clearer

Revision 55 - Directory Listing
Modified Sun Nov 15 22:54:53 2009 UTC (9 years, 9 months ago) by tdhock
add directlabels test

Revision 54 - Directory Listing
Modified Wed Nov 11 22:28:14 2009 UTC (9 years, 9 months ago) by tdhock
unit test output compatible with R-2.10 and new dependency loading feature

Revision 53 - Directory Listing
Modified Wed Nov 11 22:27:13 2009 UTC (9 years, 9 months ago) by tdhock
load pkg dependencies before sourcing package

Revision 52 - Directory Listing
Modified Wed Nov 11 22:26:18 2009 UTC (9 years, 9 months ago) by tdhock
remove Rdversion lines, R-2.10

Revision 51 - Directory Listing
Modified Wed Nov 11 15:38:23 2009 UTC (9 years, 9 months ago) by tdhock
update desc with keith as coauthor

Revision 50 - Directory Listing
Modified Mon Nov 9 18:22:20 2009 UTC (9 years, 9 months ago) by tdhock
description of set.sh

Revision 49 - Directory Listing
Modified Mon Nov 9 18:20:23 2009 UTC (9 years, 9 months ago) by tdhock
new inlinetags unit test

Revision 48 - Directory Listing
Modified Mon Nov 9 18:14:45 2009 UTC (9 years, 9 months ago) by tdhock
backwards compatible changes from keith

Revision 47 - Directory Listing
Modified Mon Nov 9 17:37:36 2009 UTC (9 years, 9 months ago) by tdhock
de-backslash list names

Revision 46 - Directory Listing
Modified Mon Nov 9 17:13:46 2009 UTC (9 years, 9 months ago) by tdhock
unit.tests better defined

Revision 45 - Directory Listing
Modified Mon Nov 9 13:32:06 2009 UTC (9 years, 9 months ago) by tdhock
first unit tests

Revision 44 - Directory Listing
Modified Mon Nov 9 12:22:59 2009 UTC (9 years, 9 months ago) by tdhock
add prefix doc

Revision 43 - Directory Listing
Modified Fri Nov 6 17:27:21 2009 UTC (9 years, 9 months ago) by tdhock
add ideas for tagging extensions

Revision 42 - Directory Listing
Modified Mon Oct 26 16:36:08 2009 UTC (9 years, 9 months ago) by tdhock
allow multiline comments before data items

Revision 41 - Directory Listing
Modified Mon Oct 26 13:45:20 2009 UTC (9 years, 9 months ago) by tdhock
inner.function test works

Revision 40 - Directory Listing
Modified Tue Oct 13 19:15:47 2009 UTC (9 years, 10 months ago) by tdhock
VERSION

Revision 39 - Directory Listing
Modified Sat Oct 3 14:14:22 2009 UTC (9 years, 10 months ago) by tdhock
need even more escapes to accurately replace backslashes

Revision 38 - Directory Listing
Modified Mon Sep 21 16:54:38 2009 UTC (9 years, 11 months ago) by tdhock
desc and docs update

Revision 37 - Directory Listing
Modified Mon Aug 31 11:52:01 2009 UTC (9 years, 11 months ago) by tdhock
rebuild examples at the end if we didnt test them

Revision 36 - Directory Listing
Modified Wed Aug 19 13:18:42 2009 UTC (10 years ago) by tdhock
convert ._ to space for Rd titles

Revision 35 - Directory Listing
Modified Tue Aug 18 20:57:20 2009 UTC (10 years ago) by tdhock
custom title allowed by commenting first line of function definition

Revision 34 - Directory Listing
Modified Tue Aug 18 14:05:29 2009 UTC (10 years ago) by tdhock
update docs for new interpretation of check parameter

Revision 33 - Directory Listing
Modified Tue Aug 18 13:54:20 2009 UTC (10 years ago) by tdhock
package checking can omit examples for speed

Revision 32 - Directory Listing
Modified Tue Aug 18 13:14:55 2009 UTC (10 years ago) by tdhock
more backslashes needed for percent escaping

Revision 31 - Directory Listing
Modified Tue Aug 18 12:48:42 2009 UTC (10 years ago) by tdhock
escape percents in Rd files

Revision 28 - Directory Listing
Modified Wed Aug 5 10:07:40 2009 UTC (10 years ago) by tdhock
extract -package info from DESCRIPTION file

Revision 24 - Directory Listing
Modified Tue Aug 4 12:40:37 2009 UTC (10 years ago) by tdhock
package.skeleton.dx default filepath .. bugfix, escape backslashes in comments, examples from test files

Revision 23 - Directory Listing
Modified Mon Aug 3 15:37:42 2009 UTC (10 years ago) by tdhock
first argument changed to pkgdir, on.exit added to package.skeleton.dx

Revision 21 - Directory Listing
Modified Mon Aug 3 15:09:28 2009 UTC (10 years ago) by tdhock
bugfix for returned docs of length 1 (was matrix, needed list), allow description for functions on line before def if its undocumented (ie constructed by a function call), allow Rd files to be manually updated if there are no significant docs in code

Revision 20 - Directory Listing
Modified Sun Aug 2 22:55:45 2009 UTC (10 years ago) by tdhock
error checking for extract.docs and extract.docs.fun

Revision 18 - Directory Listing
Modified Sat Aug 1 22:01:23 2009 UTC (10 years ago) by tdhock
error checking and automatic DESCRIPTION added

Revision 16 - Directory Listing
Modified Sat Aug 1 08:30:33 2009 UTC (10 years ago) by tdhock
website update DESCRIPTION minimal

Revision 12 - Directory Listing
Modified Sat Aug 1 07:01:02 2009 UTC (10 years ago) by tdhock
support for check and chdir args for package.skeleton.dx

Revision 8 - Directory Listing
Modified Fri Jul 31 17:13:17 2009 UTC (10 years ago) by tdhock
dots argument special case, package name alias conflict special case

Revision 7 - Directory Listing
Modified Fri Jul 31 15:11:15 2009 UTC (10 years ago) by tdhock
works with new find/replace mechanism

Revision 6 - Directory Listing
Modified Fri Jul 31 12:04:29 2009 UTC (10 years ago) by tdhock
change extract.docs.file so that reading functions should work with arbitrary packages

Revision 5 - Directory Listing
Modified Fri Jul 31 09:56:58 2009 UTC (10 years ago) by tdhock
author tag, switch statement, more comments

Revision 4 - Directory Listing
Modified Thu Jul 30 18:39:50 2009 UTC (10 years ago) by tdhock
deleted name argument, infer from DESCRIPTION file

Revision 3 - Directory Listing
Modified Thu Jul 30 09:43:37 2009 UTC (10 years ago) by tdhock
support for comments about function return values, resulting documentation passes R CMD check with no warnings

Revision 2 - Directory Listing
Modified Wed Jul 29 16:59:24 2009 UTC (10 years ago) by tdhock
First working version that passes checks successfully

Revision 1 - Directory Listing
Added Thu May 28 12:17:51 2009 UTC (10 years, 2 months ago) by stefan7th
R-Forge: updated repository structure

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