R Development Page

circular log file (check_x86_64_linux)

Wed Jun 28 12:45:34 2017: Checking package circular (SVN revision 313) ...
* using log directory ‘/mnt/building/build_2017-06-28-12-43/RF_PKG_CHECK/PKGS/circular.Rcheck’
* using R version 3.4.1 RC (2017-06-22 r72844)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘circular/DESCRIPTION’ ... OK
* this is package ‘circular’ version ‘0.4-93’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Claudio Agostinelli ’

New maintainer:
  Claudio Agostinelli 
Old maintainer(s):
  Claudio Agostinelli 

The Title field starts with the package name.

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘circular’ can be installed ... [3s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
Unexported objects imported by ':::' calls:
  ‘stats:::.approxfun’ ‘stats:::regularize.values’
  See the note in ?`:::` about the use of this operator.
  Including base/recommended package(s):
  ‘stats’
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  lines.edf plot.edf plot.function.circular
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ClmLocationCircularRidge2Rad: no visible global function definition for
  ‘lm.ridge’
ClmLocationCircularStartRad : beta.init: no visible global function
  definition for ‘wle.lm’
Undefined global functions or variables:
  lm.ridge wle.lm
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'intersect.modal.region.Rd':
  \examples lines wider than 100 characters:
       res <- intersect.modal.region(x, breaks=circular(matrix(c(pi,pi+pi/12, pi-pi/12, pi), ncol=2, byrow=TRUE)), bw=50)
       res <- intersect.modal.region(x, breaks=circular(matrix(c(pi/12, 2*pi-pi/12), ncol=2, byrow=TRUE)), bw=50)

Rd file 'projectednormal.Rd':
  \examples lines wider than 100 characters:
     data1 <- rpnorm(100, mu=c(0,0), sigma=diag(2), control.circular=list(units="degrees")) # Uniform on the circle

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ... [17s/17s] NOTE
Examples with CPU or elapsed time > 5s
                         user system elapsed
totalvariation.circular 5.952  0.032   5.987
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-median.R’
  Running ‘test-walraff.test.R’
  Comparing ‘test-walraff.test.Rout’ to ‘test-walraff.test.Rout.save’ ... OK
  Running ‘test-watson.williams.test.R’
  Comparing ‘test-watson.williams.test.Rout’ to ‘test-watson.williams.test.Rout.save’ ... OK
 [2s/2s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 5 NOTEs
See
  ‘/mnt/building/build_2017-06-28-12-43/RF_PKG_CHECK/PKGS/circular.Rcheck/00check.log’
for details.


Run time: 90.09 seconds.