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gWidgetsrJava log file (check_x86_64_linux)

Fri Feb 15 13:19:16 2013: Checking package gWidgetsrJava (SVN revision 55) ...
* using log directory ‘/mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/gWidgetsrJava.Rcheck’
* using R version 2.15.2 Patched (2013-02-13 r61942)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘gWidgetsrJava/DESCRIPTION’ ... OK
* this is package ‘gWidgetsrJava’ version ‘0.0-19’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘John Verzani ’
New submission
Package was archived on CRAN
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking whether package ‘gWidgetsrJava’ can be installed ... [10s/24s] WARNING
Found the following significant warnings:
  Warning: subclass "guiComponentWithItems" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gGroup" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gFrame" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gExpandGroup" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "guiComponentRangeSelector" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gSpinbutton" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gSlider" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gSvg" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gGenericWidget" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gGridComponent" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gTable" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gGraphics" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gGraphicsNotebook" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gText" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gToolbar" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gAction" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gHelp" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gHelpBrowser" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gTree" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gButton" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gHtml" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gCalendar" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gImage" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gCheckbox" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gLabel" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gCheckboxGroup" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gLayout" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gCombobox" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gMenu" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gVarBrowser" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gCommandline" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gNotebook" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gDf" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gPanedGroup" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gWindow" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gDfNotebook" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gRadio" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gEdit" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gSeparator" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gFilebrowse" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gFormLayout" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
  Warning: subclass "gStatusbar" of class "guiWidget" is not local and cannot be updated for new inheritance information; consider setClassUnion()
See ‘/mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/gWidgetsrJava.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘gWidgetsrJava/R/zzz.R’:
  .onLoad calls:
    require(methods)
    require(rJava)

Package startup functions should not change the search path.
See section ‘Good practice’ in ?.onAttach.

editFormulaDialog: warning in gwindow("Edit model formula values", v =
  T): partial argument match of 'v' to 'visible'
editSelectDialog: warning in gwindow("Select variables", v = TRUE):
  partial argument match of 'v' to 'visible'
editSubsetDialog: warning in gwindow("Edit subset value", v = T):
  partial argument match of 'v' to 'visible'
replayAPlot: warning in gwindow("Replay plot", v = T): partial argument
  match of 'v' to 'visible'
saveCurrentPage: warning in glabel("Saving a plot is currently kind of
  flaky", cont = group): partial argument match of 'cont' to
  'container'
saveCurrentPage: warning in gseparator(cont = group): partial argument
  match of 'cont' to 'container'
selectVectorEntriesDialog: warning in gwindow("Select values", v = T):
  partial argument match of 'v' to 'visible'
.galert,guiWidgetsToolkitrJava: warning in ggroup(cont = w): partial
  argument match of 'cont' to 'container'
.galert,guiWidgetsToolkitrJava: warning in glabel(" ", cont = g):
  partial argument match of 'cont' to 'container'
.galert,guiWidgetsToolkitrJava: warning in glabel(message, cont = g,
  expand = TRUE): partial argument match of 'cont' to 'container'
.galert,guiWidgetsToolkitrJava: warning in gimage(file = "dismiss", dir
  = "stock", cont = g, handler = function(h, ...) dispose(w)): partial
  argument match of 'file' to 'filename'
.galert,guiWidgetsToolkitrJava: warning in gimage(file = "dismiss", dir
  = "stock", cont = g, handler = function(h, ...) dispose(w)): partial
  argument match of 'dir' to 'dirname'
.galert,guiWidgetsToolkitrJava: warning in gimage(file = "dismiss", dir
  = "stock", cont = g, handler = function(h, ...) dispose(w)): partial
  argument match of 'cont' to 'container'
.ggraphics,guiWidgetsToolkitrJava: warning in glabel("No embeddable
  device\nin gWidgetsrJava", cont = container): partial argument match
  of 'cont' to 'container'
.gtableWithFilter,guiWidgetsToolkitrJava: warning in ggroup(cont = g):
  partial argument match of 'cont' to 'container'
.gtableWithFilter,guiWidgetsToolkitrJava: warning in gtable(items,
  multiple = multiple, chosencol = chosencol, handler = handler, action
  = action, cont = g, expand = TRUE): partial argument match of 'cont'
  to 'container'
.gvarbrowser,guiWidgetsToolkitrJava: warning in ggroup(cont = g):
  partial argument match of 'cont' to 'container'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
  generic '.size<-' and siglist 'gGridrJava,guiWidgetsToolkitrJava,ANY'
  generic '.size<-' and siglist
    'gTableWithFilterrJava,guiWidgetsToolkitrJava,ANY'
  generic '.size<-' and siglist
    'gWidgetrJava,guiWidgetsToolkitrJava,ANY'
  generic '.visible<-' and siglist
    'gExpandgrouprJava,guiWidgetsToolkitrJava,ANY'
  generic '.visible<-' and siglist
    'gGraphicsrJava,guiWidgetsToolkitrJava,ANY'
  generic '.visible<-' and siglist
    'gLayoutrJava,guiWidgetsToolkitrJava,ANY'
  generic '.visible<-' and siglist
    'gWidgetrJava,guiWidgetsToolkitrJava,ANY'
  generic '.visible<-' and siglist
    'gWindowrJava,guiWidgetsToolkitrJava,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [3s/7s] OK
* checking for unstated dependencies in tests ... WARNING
‘library’ or ‘require’ call not declared from: ‘RUnit’
* checking tests ...
  Running ‘RunTests.R’ [8s/20s]
  Running ‘runRUnit.R’
 [9s/22s] OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There were 2 notes.
See
  ‘/mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/gWidgetsrJava.Rcheck/00check.log’
for details.

Run time: 237.49 seconds.