SCM

R Development Page

Contributed R Packages

Below is a list of all packages provided by project Processing SNP arrays.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).

Packages

ACNE

Affymetrix SNP probe-summarization using non-negative matrix factorization

  Package for NMF summarization of SNP probes.
  Version: 0.7.0 | Last change: 2013-11-01 06:43:45+01 | Rev.: 224
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get ACNE 0.7.0 from CRAN
  R install command: install.packages("ACNE", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


NSA

Post-normalization of total copy numbers

  Post-normalization of total copy-number estimates.
  Version: 0.0.32 | Last change: 2012-12-20 20:24:38+01 | Rev.: 202
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get NSA 0.0.32 from CRAN
  R install command: install.packages("NSA", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


calmate

CalMaTe - Improved allele-specific copy number of SNP arrays for downstream segmentation

  A multi-array post-processing method of allele-specific copy-number estimates (ASCNs)
  Version: 0.11.2 | Last change: 2014-01-31 08:57:23+01 | Rev.: 225
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get calmate 0.11.0 from CRAN
  R install command: install.packages("calmate", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

 

Build status codes

0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).

If your package is not shown on this page or not building, then check the build system status report.

Thanks to:
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