R Development Page

EEG log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/EEG.Rcheck'
* using R version 2.15.2 Patched (2013-01-31 r61797)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'EEG/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EEG' version '1.0'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Raoul Grasman , Wouter Weeda
'
New submission
Non-FOSS package license (GPL v. 2 or higher (at your choice))
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking whether package 'EEG' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... WARNING
Non-standard license specification:
  GPL v. 2 or higher (at your choice)
Standardizable: FALSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
t:
  function(x)
t.test.mbvadata.frame:
  function(x, y, chan, ylim, xlim, alpha, xdens, cicolx, legx, legy,
           type, cname, pat, ...)

See section 'Generic functions and methods' of the 'Writing R
Extensions' manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eeg.plot: warning in dataViewport(range(x) + width, range(y), exten =
  0.15, name = "head"): partial argument match of 'exten' to
  'extension'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown package(s) 'regex', 'Extract.data.frame', 't.test.mbvadata.frame', 'mean.bvadata', 'mean.mbvadata.frame', 'importBVA', 'plot.ts', 'as.ts.bvadata' in Rd xrefs
Missing link(s) in documentation object 'R:/run/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/EEG.Rcheck/00_pkg_src/EEG/man/EEG-package.Rd':
  '[EEG:rbind.mbva.data.frame]{rbind}'

Missing link(s) in documentation object 'R:/run/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/EEG.Rcheck/00_pkg_src/EEG/man/aggregate.mbvadata.frame.Rd':
  '[base:aggregate]{aggregate}'

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'c.bvadata':
  'c.bvadata'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
Warning: parse error in file 'EEG-Ex.R':
'\.' is an unrecognized escape in character string starting "\."
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... WARNING
  Warning: found non-ASCII string(s)
  'F7,Mast,,B5V' in object 'gavgs'
  'F3,Mast,,B5V' in object 'gavgs'
  'T7,Mast,,B5V' in object 'gavgs'
  'C3,Mast,,B5V' in object 'gavgs'
  'P3,Mast,,B5V' in object 'gavgs'
  'Pz,Mast,,B5V' in object 'gavgs'
  'PO3,Mast,,B5V' in object 'gavgs'
  'O1,Mast,,B5V' in object 'gavgs'
  'Oz,Mast,,B5V' in object 'gavgs'
  'O2,Mast,,B5V' in object 'gavgs'
  'PO4,Mast,,B5V' in object 'gavgs'
  'P4,Mast,,B5V' in object 'gavgs'
  'C4,Mast,,B5V' in object 'gavgs'
  'F4,Mast,,B5V' in object 'gavgs'
  'F8,Mast,,B5V' in object 'gavgs'
  'Fz,Mast,,B5V' in object 'gavgs'
  'Cz,Mast,,B5V' in object 'gavgs'
  'F_re_force,,,B5V' in object 'gavgs'
  'F_li_force,,,B5V' in object 'gavgs'
  'P7,Mast,,B5V' in object 'gavgs'
  'P8,Mast,,B5V' in object 'gavgs'
  'T8,Mast,,B5V' in object 'gavgs'
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in 'EEG-Ex.R' failed
The error most likely occurred in:

> ### Name: erp.ttest.mbvadata.frame
> ### Title: Time sample-wise t-tests for ERPs
> ### Aliases: erp.ttest.mbvadata.frame t.test.mbvadata.frame
> ### Keywords: hplot htest
> 
> ### ** Examples
> 
> ##---- Should be DIRECTLY executable !! ----
> ##-- ==>  Define data, use random,
> ##--	or do  help(data=index)  for the standard data sets.
> 
> ## The function is currently defined as
> function(obj1, obj2, chan='Cz', ylim, xlim, alpha=0.05, xdens=NULL, cicolx='gray',legx="topright", 
+ 	legy=ylim[2]*.9, type=c('within', 'between'), cname, pat="\..")
Error: '\.' is an unrecognized escape in character string starting "\."
Execution halted
Run time: 34.58 seconds.