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Vennerable log file (check_x86_64_linux)

Thu Jul 25 04:41:59 2013: Checking package Vennerable (SVN revision 82) ...
* using log directory ‘/mnt/building/build_2013-07-25-04-15/RF_PKG_CHECK/PKGS/Vennerable.Rcheck’
* using R version 3.0.1 Patched (2013-07-23 r63392)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘Vennerable/DESCRIPTION’ ... OK
* this is package ‘Vennerable’ version ‘3.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Jonathan Swinton ’
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Vennerable’ can be installed ... [4s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
PlotIntersectionText: warning in grid.text(x = VI$x[ij], y = VI$y[ij],
  hjust = hj[ij], gp = gp[[VI$FaceName[ij]]], vjust = vj[ij], label =
  VI$Annotation[ij], default.unit = "native"): partial argument match
  of 'default.unit' to 'default.units'
PlotSetLabels: warning in grid.text(x = VLabels$x[ij], y =
  VLabels$y[ij], hjust = hj[ij], vjust = vj[ij], gp = gp[[ij]], label =
  as.character(VLabels$Label[ij]), default.unit = "native"): partial
  argument match of 'default.unit' to 'default.units'
TDtograph: warning in .face.to.faceEdges(drawing = TD, face = sname,
  type = "set"): partial argument match of 'face' to 'faceName'
TDtograph: warning in .faceEdgeNames(drawing = TD, face = fname,
  unsigned = FALSE): partial argument match of 'face' to 'faceName'
TDtograph: warning in .face.to.faceEdges(drawing = TD, face = fname):
  partial argument match of 'face' to 'faceName'
compute.AWFE: warning in get("VennDiagrams", env = env): partial
  argument match of 'env' to 'envir'
compute.E4: warning in get("VennDiagrams", env = env): partial argument
  match of 'env' to 'envir'
makeQn: warning in Venn(n = nSets): partial argument match of 'n' to
  'numberOfSets'
PlotUniverse,VennDrawing: warning in grid.rect(x = mean(uv[, 1]), y =
  mean(uv[, 2]), width = diff(uv[, 1]), height = diff(uv[, 2]),
  default.unit = "native", gp = gp): partial argument match of
  'default.unit' to 'default.units'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [9s/9s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘bug00002CW1.R’
  Running ‘bug0000no11.R’
  Running ‘bug0521AprilMayNovember.R’
  Running ‘bug0522CR0100.R’
  Running ‘bug0524CR1100.R’
  Running ‘bug0528twocircles.R’
  Running ‘bug0532JuneAprilMay.R’
  Running ‘bug06492CEuler.R’
  Running ‘bug0649no10.R’
  Running ‘bugchocicepeas.R’
  Running ‘bugellipseear.R’
  Running ‘bugjoiningcircles.R’
  Running ‘facelabeltwocircles.R’
 [30s/31s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
   ‘AWFE.Rnw’ ... [21s/22s] OK
   ‘Euler3Sets.Rnw’ ... [27s/27s] OK
   ‘TissueDrawingTest.Rnw’ ... [20s/20s] OK
   ‘Venn.Rnw’ ... [28s/28s] OK
   ‘VennDrawingTest.Rnw’ ... [15s/15s] OK
 [110s/111s] OK
* checking re-building of vignette outputs ... [102s/102s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/mnt/building/build_2013-07-25-04-15/RF_PKG_CHECK/PKGS/Vennerable.Rcheck/00check.log’
for details.

Run time: 343.06 seconds.