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hyperSpecGUI log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/hyperSpecGUI.Rcheck'
* using R version 2.15.2 Patched (2013-01-31 r61797)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'hyperSpecGUI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'hyperSpecGUI' version '0.02-20111108'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Claudia Beleites '
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking whether package 'hyperSpecGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
spikes.interactive: warning in ggroup(horizontal = FALSE, cont =
  window): partial argument match of 'cont' to 'container'
spikes.interactive: warning in ggraphics(width = 800, height = 400,
  cont = maingroup): partial argument match of 'cont' to 'container'
spikes.interactive: warning in gpanedgroup(horizontal = FALSE, cont =
  pgroup): partial argument match of 'cont' to 'container'
spikes.interactive: warning in ggroup(cont = rgroup): partial argument
  match of 'cont' to 'container'
spikes.interactive: warning in ggraphics(width = 400, height = 200,
  cont = rrgroup): partial argument match of 'cont' to 'container'
spikes.interactive: warning in ggroup(cont = rgroup, horizontal =
  FALSE): partial argument match of 'cont' to 'container'
spikes.interactive: warning in ggroup(cont = vzoomgroup): partial
  argument match of 'cont' to 'container'
spikes.interactive: warning in ggraphics(width = 400, height = 200,
  cont = hzoomgroup): partial argument match of 'cont' to 'container'
spikes.interactive: warning in ggroup(cont = window): partial argument
  match of 'cont' to 'container'
spikes.interactive: warning in gstatusbar("Click the main plot to
  redraw.", cont = window): partial argument match of 'cont' to
  'container'
spikes.interactive: warning in ggroup(cont = maingroup): partial
  argument match of 'cont' to 'container'
spikes.interactive: warning in gslider(from = 0, to = 20, by = 1, value
  = nspc, cont = nspcgroup, handler = function(...) {: partial argument
  match of 'cont' to 'container'
spikes.interactive: warning in calcspc(svalue(gnspc)): partial argument
  match of 'cont' to 'container'
spikes.interactive: warning in plotMain(): partial argument match of
  'cont' to 'container'
spikes.interactive: warning in }, expand = TRUE): partial argument
  match of 'cont' to 'container'
spikes.interactive: warning in gslider(from = 0, to = 20, by = 1, value
  = npts, cont = nptsgroup, handler = function(...) {: partial argument
  match of 'cont' to 'container'
spikes.interactive: warning in calcwl(svalue(gnpts)): partial argument
  match of 'cont' to 'container'
spikes.interactive: warning in gseparator(cont = hzoomgroup, horizontal
  = FALSE): partial argument match of 'cont' to 'container'
spikes.interactive: warning in gslider(cont = hzoomgroup, horizontal =
  FALSE, handler = function(...) {: partial argument match of 'cont' to
  'container'
spikes.interactive: warning in plotSubs(): partial argument match of
  'cont' to 'container'
spikes.interactive: warning in gbutton("Good Spectrum", cont = gbtngrp,
  handler = function(h, ...) {: partial argument match of 'cont' to
  'container'
spikes.interactive: warning in iwlsel <<- integer(0): partial argument
  match of 'cont' to 'container'
spikes.interactive: warning in spikiness[spikiness[, "row"] == ispc,
  "spikiness"] <<- 0: partial argument match of 'cont' to 'container'
spikes.interactive: warning in nextSuspicion(): partial argument match
  of 'cont' to 'container'
spikes.interactive: warning in }): partial argument match of 'cont' to
  'container'
spikes.interactive: warning in gbutton("Bad Spectrum", cont = gbtngrp,
  handler = function(h, ...) {: partial argument match of 'cont' to
  'container'
spikes.interactive: warning in iwlsel <<- 1:length(wl): partial
  argument match of 'cont' to 'container'
spikes.interactive: warning in gbutton("Next Suspicion", cont =
  gbtngrp, handler = function(h, ...) {: partial argument match of
  'cont' to 'container'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'spikes.interactive'
  'x' 'zoomfactor' '...'
Documented arguments not in \usage in documentation object 'spikes.interactive':
  'spc' 'save.tmp' 'use.tmp' 'ispikes' 'iispikes'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  'R:/run/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/hyperSpecGUI.Rcheck/00check.log'
for details.

Run time: 82.01 seconds.