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MuMIn log file (check_x86_64_linux)

Sat May 30 19:08:08 2020: Checking package MuMIn (SVN revision 477) ...
* using log directory ‘/srv/rf/building/build_2020-05-30-19-07/RF_PKG_CHECK/PKGS/MuMIn.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘MuMIn/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MuMIn’ version ‘1.44.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning in url(sprintf("%s/src/contrib/PACKAGES.gz", u), "rb") :
  URL 'https://CRAN.R-project.org/src/contrib/PACKAGES.gz': status was 'SSL peer certificate or SSH remote key was not OK'
NB: need Internet access to use CRAN incoming checks
 NOTE
Maintainer: ‘Kamil Bartoń ’

Found the following (possibly) invalid URLs:
  URL: https://cran.r-project.org/package=MASS
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=MCMCglmm
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=RMark
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=aod
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=aods3
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=betareg
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=brglm
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=caper
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=coxme
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=cplm
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=gamlss
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=gamm4
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=gee
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=geeM
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=geepack
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=glmmML
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=glmmTMB
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=lme4
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=logistf
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=maxlike
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=mgcv
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=nlme
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=nnet
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=ordinal
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=pscl
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=quantreg
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=spatialreg
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=splm
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=survival
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=unmarked
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://cran.r-project.org/package=wgeesel
    From: man/supported-classes.Rd
    Status: Error
    Message: libcurl error code 60:
      	server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 NOTE
Packages which this enhances but not available for checking:
  'aod', 'aods3', 'betareg', 'caper', 'coxme', 'cplm', 'gee', 'glmmML',
  'logistf', 'MCMCglmm', 'ordinal', 'pscl', 'spdep', 'spatialreg',
  'splm', 'unmarked', 'geeM', 'gamlss'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MuMIn’ can be installed ... [14s/14s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [27s/27s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Unknown packages ‘AICcmodavg’, ‘glmulti’, ‘arm’, ‘gee’, ‘geeM’, ‘wgeesel’, ‘ape’, ‘bestglm’, ‘leaps’, ‘cplm’, ‘gamlss’, ‘glmmML’, ‘glmmTMB’, ‘MCMCglmm’, ‘pscl’, ‘aod’, ‘aods3’, ‘betareg’, ‘brglm’, ‘spatialreg’, ‘splm’, ‘coxme’, ‘ordinal’, ‘logistf’, ‘caper’, ‘maxlike’, ‘RMark’ in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [12s/14s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘gam-smooth-match.R’
  Running ‘gam.R’
  Running ‘glm.R’
  Running ‘glm.nb.R’
  Running ‘misc-tests.R’
  Running ‘multinom.R’
  Running ‘nlme.R’
  Running ‘parallel.R’
  Running ‘quasibinomial.R’
  Running ‘rlm.R’
  Running ‘singularities.R’
  Running ‘survival.R’
 [27s/29s] OK
* checking PDF version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 3 NOTEs
See
  ‘/srv/rf/building/build_2020-05-30-19-07/RF_PKG_CHECK/PKGS/MuMIn.Rcheck/00check.log’
for details.


Run time: 133.94 seconds.

Additional Logs:   00install.out
Thanks to:
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