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splits log file (check_x86_64_linux)

Fri Jul 16 07:48:06 2021: Checking package splits (SVN revision 56) ...
Additional arguments to R CMD check: --no-examples --no-tests --no-vignettes
* using log directory ‘/srv/rf/building/build_2021-07-16-07-47/RF_PKG_CHECK/PKGS/splits.Rcheck’
* using R version 4.1.0 Patched (2021-07-14 r80620)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-examples --no-tests --no-vignettes --as-cran’
* checking for file ‘splits/DESCRIPTION’ ... OK
* this is package ‘splits’ version ‘1.0-20’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Thomas Ezard ’

New submission

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘splits’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] NOTE
gmyc : read.data: no visible binding for global variable ‘sb’
gmyc : read.data: no visible binding for global variable ‘numtip’
gmyc : read.data: no visible binding for global variable ‘numall’
gmyc : read.data: no visible binding for global variable ‘nested’
gmyc : read.data: no visible binding for global variable ‘nesting’
gmyc : l.prep: no visible binding for global variable ‘mrca.nodes’
gmyc : l.prep: no visible binding for global variable ‘n’
gmyc : l.prep: no visible binding for global variable ‘nod.type’
gmyc : l.prep: no visible binding for global variable ‘bt’
gmyc : l.prep: no visible binding for global variable ‘nested’
gmyc : l.prep: no visible binding for global variable ‘numtip’
gmyc : l.prep: no visible binding for global variable ‘nod’
gmyc : l.null: no visible binding for global variable ‘internod’
gmyc : l.min2: no visible binding for global variable ‘n’
gmyc : l.min2: no visible binding for global variable ‘s.nod’
gmyc : l.min2: no visible binding for global variable ‘i.mat’
gmyc : l.min2: no visible binding for global variable ‘internod’
gmyc : gmyc.likelihood: no visible binding for global variable ‘lambda’
gmyc : gmyc.likelihood: no visible binding for global variable ‘n’
gmyc : gmyc.likelihood: no visible binding for global variable ‘s.nod’
gmyc : gmyc.exhaustive : re.combn: no visible binding for global
  variable ‘numtip’
gmyc : gmyc.exhaustive : remove.tips: no visible binding for global
  variable ‘numtip’
gmyc : gmyc.exhaustive: no visible binding for global variable ‘numtip’
gmyc : gmyc.exhaustive: no visible binding for global variable ‘nested’
gmyc : gmyc.single: no visible binding for global variable ‘lambda.div’
gmyc : gmyc.single: no visible binding for global variable ‘sb’
gmyc : gmyc.single: no visible binding for global variable ‘bt.ancs’
gmyc : gmyc.single: no visible binding for global variable ‘bt’
gmyc : gmyc.multi : renew.mrca : f.renew: no visible binding for global
  variable ‘numtip’
gmyc : gmyc.multi : renew.mrca : d.renew: no visible binding for global
  variable ‘numtip’
gmyc : gmyc.multi : renew.likelihood.from.thresh: no visible binding
  for global variable ‘bt’
gmyc : gmyc.multi : renew.likelihood.from.thresh: no visible binding
  for global variable ‘numtip’
gmyc : gmyc.multi : renew.likelihood.from.thresh: no visible binding
  for global variable ‘nested’
gmyc : gmyc.multi: no visible binding for global variable ‘lambda.div’
gmyc : gmyc.multi: no visible binding for global variable ‘numtip’
gmyc : gmyc.multi: no visible binding for global variable ‘sb’
gmyc: no visible binding for global variable ‘numtip’
gmyc: no visible binding for global variable ‘sb’
gmyc : reduce.threshold: no visible binding for global variable
  ‘numtip’
gmyc : reduce.threshold: no visible binding for global variable ‘bt’
Undefined global functions or variables:
  bt bt.ancs i.mat internod lambda lambda.div mrca.nodes n nested
  nesting nod nod.type numall numtip s.nod sb
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘nFactors’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 3 NOTEs
See
  ‘/srv/rf/building/build_2021-07-16-07-47/RF_PKG_CHECK/PKGS/splits.Rcheck/00check.log’
for details.


Run time: 30.4 seconds.