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classSNitch log file (check_x86_64_linux)

Sun Oct  9 18:05:58 2016: Checking package classSNitch (SVN revision 59) ...
* using log directory ‘/mnt/building/build_2016-10-09-18-04/RF_PKG_CHECK/PKGS/classSNitch.Rcheck’
* using R version 3.3.1 Patched (2016-10-08 r71472)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘classSNitch/DESCRIPTION’ ... OK
* this is package ‘classSNitch’ version ‘1.0.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Laederach Lab ’

New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘classSNitch’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Maintainer field differs from that derived from Authors@R
  Maintainer: ‘Laederach Lab ’
  Authors@R:  ‘Chanin Tolson ’

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getChangeVar : changeSpread: no visible global function definition for
  ‘var’
getESDC: no visible global function definition for ‘cor’
getESDC: no visible binding for global variable ‘cor’
getFeatures: no visible global function definition for ‘boxplot’
getFeatures: no visible global function definition for ‘write.table’
getMagCC: no visible global function definition for ‘cor’
getMagCC: no visible binding for global variable ‘cor’
getPatternCC : pattern: no visible global function definition for ‘cor’
normalize: no visible global function definition for ‘optimize’
normalize: no visible binding for global variable ‘optimize’
predict.classifyRNA: no visible global function definition for
  ‘predict’
reduceNoise: no visible global function definition for ‘boxplot’
Undefined global functions or variables:
  boxplot cor optimize predict var write.table
Consider adding
  importFrom("graphics", "boxplot")
  importFrom("stats", "cor", "optimize", "predict", "var")
  importFrom("utils", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [6s/6s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/mnt/building/build_2016-10-09-18-04/RF_PKG_CHECK/PKGS/classSNitch.Rcheck/00check.log’
for details.


Run time: 68.34 seconds.