R Development Page
Contributed R Packages
Below is a list of all packages provided by project Classification of RNA Structure Change.
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Classifies RNA Structure Change in Chemical Mapping Data
|Variations in RNA sequence lead to differences in RNA structure called riboSNitches, if important structural elements are disrupted. Recent ultra-high throughput techniques, such as SHAPE-MaP and PARS, enable the collection of structural information on RNAs at a genome-wide scale. With the ability to gather large amounts of structural information, it is important to accurately identify those structural changes that can potentially result in a phenotypic outcome. We have developed an automated approach to identify and classify structure change in chemical mapping data. This method utilizes random forest classification on a set of seven characterizing features. The default mutate and map SHAPE data sets (or another user specified data set) can be used to build a classifier. The classifier is then used to identify structure change in other SHAPE traces. Enabling scientists to identify structure change may help guide experiments that examine RNA structure and its role in biological processes.|
|Version: 1.0.0 | Last change: 2016-10-09 17:59:47+02 | Rev.: 59|
|Download: (.tar.gz) | (.zip) | Build status: Current|
R install command:
Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.