R Development Page
Contributed R Packages
Below is a list of all packages provided by project StatOmics.
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Packages
G3C | Genetic Correlation Contrast test for Causality (GCC) | |||||||||
Testing the difference between genetic correlation estimates reported by LD Score regression (LDSC), to infer causality. | ||||||||||
Version: 1.1-2 | Last change: 2017-08-21 15:27:49+02 | Rev.: 26 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | ||||||||||
R install command:
install.packages("G3C", repos="http://R-Forge.R-project.org") | ||||||||||
|
bounds | Bounds for causal and sufficient-cause interactions | |||||||||
This package contains functions for estimating bounds of causal interactions and sufficient-cause interactions. Standard errors are also estimated via bootstrap. | ||||||||||
Version: 0.1-2 | Last change: 2015-03-10 17:11:19+01 | Rev.: 13 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | ||||||||||
R install command:
install.packages("bounds", repos="http://R-Forge.R-project.org") | ||||||||||
|
p.exact | Exact P-values for Genome-Wide Association Analyses in Inbred Populations | |||||||||
This package implements for calculating exact dataset-specific p-values for genome-wide association (GWA) analyses in inbred populations. The module is compatible with existing GenABEL/gwaa.data data formats. | ||||||||||
Version: 0.1-1 | Last change: 2015-02-16 21:51:05+01 | Rev.: 12 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | ||||||||||
R install command:
install.packages("p.exact", repos="http://R-Forge.R-project.org") | ||||||||||
|
sojo | Selection Operator for Jointly analyzing multiple variants (SOJO) | |||||||||
Computing penalized Selection Operator for JOintly analyzing multiple variants (SOJO) within a mapped locus, based on LASSO regression derived from GWAS summary statistics. | ||||||||||
Version: 2.0 | Last change: 2018-05-30 11:36:16+02 | Rev.: 36 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | ||||||||||
R install command:
install.packages("sojo", repos="http://R-Forge.R-project.org") | ||||||||||
|
Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.