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packfor log file (check_x86_64_linux)

Fri Jun 17 09:30:24 2016: Checking package packfor (SVN revision 136) ...
* using log directory ‘/mnt/building/build_2016-06-17-09-25/RF_PKG_CHECK/PKGS/packfor.Rcheck’
* using R version 3.3.1 RC (2016-06-15 r70791)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘packfor/DESCRIPTION’ ... OK
* this is package ‘packfor’ version ‘0.0-8’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Stephane Dray ’

New submission

The Title field should be in title case, current version then in title case:
‘Forward Selection with permutation (Canoco p.46)’
‘Forward Selection with Permutation (Canoco P.46)’

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘packfor’ can be installed ... [1s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  GPL 3
Standardizable: TRUE
Standardized license specification:
  GPL-3
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘vegan’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
forward.sel.par : FPval: no visible global function definition for ‘pf’
forward.sel.par: no visible global function definition for ‘simpleRDA2’
forward.sel.par: no visible global function definition for ‘RsquareAdj’
Undefined global functions or variables:
  RsquareAdj pf simpleRDA2
Consider adding
  importFrom("stats", "pf")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'forward.sel.Rd':
  \usage lines wider than 90 characters:
     forward.sel.par(Y, X, alpha = 0.05, K = nrow(X)-1, R2thresh = 0.99, R2more = 0.001, adjR2thresh = 0.99, Yscale = FALSE, verbose=TRUE)

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... WARNING
File ‘packfor/libs/packfor.so’:
  Found ‘exit’, possibly from ‘exit’ (C)
    Object: ‘forward.o’
  Found ‘rand’, possibly from ‘rand’ (C)
    Object: ‘forward.o’
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘forward.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... [0s/0s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 5 NOTEs
See
  ‘/mnt/building/build_2016-06-17-09-25/RF_PKG_CHECK/PKGS/packfor.Rcheck/00check.log’
for details.


Run time: 23.72 seconds.

Additional Logs:   00install.out
Thanks to:
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