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AEM log file (check_x86_64_linux)

Mon Jul 13 10:25:43 2015: Checking package AEM (SVN revision 127) ...
* using log directory ‘/mnt/building/build_2015-07-13-10-24/RF_PKG_CHECK/PKGS/AEM.Rcheck’
* using R version 3.2.1 Patched (2015-07-11 r68646)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘AEM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AEM’ version ‘0.6’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘F. Guillaume Blanchet ’
New submission

The Title field should be in title case, current version then in title case:
‘Tools to construct Asymmetric eigenvector maps (AEM) spatial variables’
‘Tools to Construct Asymmetric Eigenvector Maps (AEM) Spatial Variables’

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AEM’ can be installed ... [6s/6s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'aem.Rd':
  \examples lines wider than 100 characters:
     symbols(x=xy[,2:3],circles=abs(res$vectors[,1]),inches=FALSE,asp=1,fg=ifelse(sign(-res$vectors[,1])+1>0,1,0),bg=ifelse(sign(res$vectors ... [TRUNCATED]
     symbols(x=xy[,2:3],circles=abs(res$vectors[,2]),inches=FALSE,asp=1,fg=ifelse(sign(-res$vectors[,2])+1>0,1,0),bg=ifelse(sign(res$vectors ... [TRUNCATED]
     symbols(x=xy[,2:3],circles=abs(res$vectors[,3]),inches=FALSE,asp=1,fg=ifelse(sign(-res$vectors[,3])+1>0,1,0),bg=ifelse(sign(res$vectors ... [TRUNCATED]
     symbols(x=xy[,2:3],circles=abs(res$vectors[,4]),inches=FALSE,asp=1,fg=ifelse(sign(-res$vectors[,4])+1>0,1,0),bg=ifelse(sign(res$vectors ... [TRUNCATED]
     symbols(x=xy[,2:3],circles=abs(res2$vectors[,1]),inches=FALSE,asp=1,fg=ifelse(sign(-res2$vectors[,1])+1>0,1,0),bg=ifelse(sign(res2$vect ... [TRUNCATED]
     symbols(x=xy[,2:3],circles=abs(res2$vectors[,2]),inches=FALSE,asp=1,fg=ifelse(sign(-res2$vectors[,2])+1>0,1,0),bg=ifelse(sign(res2$vect ... [TRUNCATED]
     symbols(x=xy[,2:3],circles=abs(res2$vectors[,3]),inches=FALSE,asp=1,fg=ifelse(sign(-res2$vectors[,3])+1>0,1,0),bg=ifelse(sign(res2$vect ... [TRUNCATED]
     symbols(x=xy[,2:3],circles=abs(res2$vectors[,4]),inches=FALSE,asp=1,fg=ifelse(sign(-res2$vectors[,4])+1>0,1,0),bg=ifelse(sign(res2$vect ... [TRUNCATED]

Rd file 'build.binary.Rd':
  \usage lines wider than 90 characters:
     build.binary(nb.object=NULL, coords,link=NULL, unit.angle = "degrees", rot.angle = 0, rm.same.y = TRUE, plot.connexions = TRUE)
  \examples lines wider than 100 characters:
     ### Build a binary site-by-link matrix; remove the site which have identical Y coordinate (by default argument: rm.same.y = TRUE)
     ### Build a binary site-by-link matrix using the argument link: remove the site which have identical Y coordinate (by default argument: ... [TRUNCATED]
     ### Build a binary site-by-link matrix, making the process affect the points at an angle of 45 degrees
     ### Build a binary site-by-link matrix, making the process affect the points at an angle of pi/3 radians

Rd file 'moran.I.multi.Rd':
  \usage lines wider than 90 characters:
     moran.I.uni(x, mat.W, scaled = FALSE,normalize=FALSE, na.rm = FALSE, test.type="permutation",nperm=999,alternative = "greater")
     moran.I.multi(eigenvector.mat,link,weight,scaled=FALSE,normalize=FALSE,na.rm = FALSE,test.type="permutation",nperm=999,plot.res=TRUE)

Rd file 'weight.edges.Rd':
  \usage lines wider than 90 characters:
     weight.edges(nb.object, coords, distmat = NULL, alpha = 2, beta = NULL, max.d = NULL, unit.angle = "degrees", rot.angle = 0, rm.same.y  ... [TRUNCATED]
     weight.time(dates, distmat = NULL, alpha = 2, beta = NULL, max.d = NULL, unit.angle = "degrees", rot.angle = 0, rm.same.y = TRUE, plot. ... [TRUNCATED]
  \examples lines wider than 100 characters:
     ###  Example - 12 dates (days from January 1st of year 1) in a 6-year study starting September 5, 2000
     (wtime <- weight.edges(nb, xy.dates, alpha=2, max.d=autocor.limit,rot.angle=90)) # Note that 'rot.angle=90' was used

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ... [9s/9s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/mnt/building/build_2015-07-13-10-24/RF_PKG_CHECK/PKGS/AEM.Rcheck/00check.log’
for details.


Run time: 81.71 seconds.

Additional Logs:   00install.out
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge