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roxygen log file (check_x86_64_linux)

Mon Apr 16 16:27:24 2012: Checking package roxygen (SVN revision 268) ...
* using log directory ‘/mnt/building/build_2012-04-13-10-57/RF_PKG_CHECK/PKGS/roxygen.Rcheck’
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘roxygen/DESCRIPTION’ ... OK
* this is package ‘roxygen’ version ‘0.1-3’
* checking CRAN incoming feasibility ... WARNING
Insufficient package version (submitted: 0.1.3, existing: 0.1.3)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking whether package ‘roxygen’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
copy.dir: warning in list.files(source, full.name = TRUE, recursive =
  TRUE, all.files = TRUE): partial argument match of 'full.name' to
  'full.names'
new_cache : cache_set: warning in assign(key, value, env = cache):
  partial argument match of 'env' to 'envir'
new_cache : cache_get: warning in get(key, env = cache, inherits =
  FALSE): partial argument match of 'env' to 'envir'
new_cache : cache_has_key: warning in exists(key, env = cache, inherits
  = FALSE): partial argument match of 'env' to 'envir'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
  ‘GSoC-idea.tex’

Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test-all.R’
 [1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
   ‘roxygen.Rnw’ using ‘UTF-8’ ... [0s/0s] OK
 [0s/0s] OK
* checking re-building of vignette PDFs ... [1s/2s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  ‘/mnt/building/build_2012-04-13-10-57/RF_PKG_CHECK/PKGS/roxygen.Rcheck/00check.log’
for details.

Run time: 38.93 seconds.