R Development Page
Logfile for HDPenReg not available.
This package probably failed to build. See the build log for the source package:
Mon Apr 8 14:10:10 2019: Building tarball for package HDPenReg (SVN revision 188)
using R version 3.5.3 (2019-03-11) ...
* checking for file ‘HDPenReg/DESCRIPTION’ ... OK
* preparing ‘HDPenReg’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘HDPenReg’ ...
** libs
g++ -std=gnu++11 -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -g -O2 -c EMPenModels.cpp -o EMPenModels.o
gcc -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include -fpic -g -O2 -c init.c -o init.o
g++ -std=gnu++11 -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -g -O2 -c larsR.cpp -o larsR.o
(cd ./HDPenReg && make all)
make[1]: Entering directory '/tmp/RtmpExk3US/Rbuild315a2cb15c52/HDPenReg/src/HDPenReg'
(make -f lassoModels.mk)
make[2]: Entering directory '/tmp/RtmpExk3US/Rbuild315a2cb15c52/HDPenReg/src/HDPenReg'
g++ -std=gnu++11 `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -g -O2 -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include lassoModels/LassoSolver.cpp -c -o lassoModels/LassoSolver.o
g++ -std=gnu++11 `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -g -O2 -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include lassoModels/FusedLassoPenalty.cpp -c -o lassoModels/FusedLassoPenalty.o
g++ -std=gnu++11 `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -g -O2 -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include lassoModels/FusedLassoSolver.cpp -c -o lassoModels/FusedLassoSolver.o
g++ -std=gnu++11 `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -g -O2 -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include lassoModels/LogisticLassoSolver.cpp -c -o lassoModels/LogisticLassoSolver.o
g++ -std=gnu++11 `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -g -O2 -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include lassoModels/LogisticFusedLassoSolver.cpp -c -o lassoModels/LogisticFusedLassoSolver.o
g++ -std=gnu++11 `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -g -O2 -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include lassoModels/CV.cpp -c -o lassoModels/CV.o
g++ -std=gnu++11 `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CxxFlags()"` -fopenmp -fpic -g -O2 -I"/srv/R/R-patched/build.19-04-05/include" -DNDEBUG `/srv/R/R-patched/build.19-04-05/bin/Rscript -e "rtkore:::CppFlags()"` -I"/home/rforge/lib/R/3.5/rtkore/include" -I"/home/rforge/lib/R/3.5/Rcpp/include" -I/usr/local/include EMmain.cpp -c -o EMmain.o
In file included from /home/rforge/lib/R/3.5/rtkore/include/RTKpp.h:44,
from EMmain.cpp:1:
/home/rforge/lib/R/3.5/rtkore/projects/Rtkpp/include/STK_RMatrix.h: In instantiation of ‘class STK::RMatrix’:
EMmain.cpp:26:34: required from here
/home/rforge/lib/R/3.5/rtkore/projects/Rtkpp/include/STK_RMatrix.h:166:66: error: no type named ‘ReturnType’ in ‘struct STK::hidden::Traits >’
typedef typename hidden::Traits >::ReturnType ReturnType;
^~~~~~~~~~
In file included from /home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_ExprBase.h:38,
from /home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_ArrayBase.h:39,
from /home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_IArrayBase.h:38,
from /home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_IArray2D.h:44,
from /home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_Array2DPoint.h:39,
from /home/rforge/lib/R/3.5/rtkore/include/Arrays.h:70,
from /home/rforge/lib/R/3.5/rtkore/include/STKpp.h:156,
from /home/rforge/lib/R/3.5/rtkore/include/RTKppForward.h:41,
from /home/rforge/lib/R/3.5/rtkore/include/RTKpp.h:41,
from EMmain.cpp:1:
/home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_ITContainer.h: In instantiation of ‘STK::ITContainerBase::TypeConst STK::ITContainerBase::elt(int, int) const [with Derived = STK::RMatrix; STK::ITContainerBase::TypeConst = const double&]’:
/home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/assign/STK_AssignSelector.h:256:9: required from ‘static void STK::hidden::Copycat::runByCol(Lhs&, const Rhs&) [with Lhs = STK::Array2D; Rhs = STK::RMatrix]’
/home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/assign/STK_AssignSelector.h:802:64: required from ‘static void STK::hidden::CopycatSelector::run(Lhs&, const Rhs&) [with Lhs = STK::Array2D; Rhs = STK::RMatrix]’
/home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_ArrayBaseAssign.h:93:59: required from ‘Derived& STK::ArrayBase::assign(const STK::ExprBase&) [with Rhs = STK::RMatrix; Derived = STK::Array2D]’
/home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_ArrayBaseAssign.h:107:32: required from ‘Derived& STK::ArrayBase::operator=(const STK::ExprBase&) [with Rhs = STK::RMatrix; Derived = STK::Array2D]’
/home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_Array2D.h:171:25: required from ‘STK::Array2D::Array2D(const STK::ExprBase&) [with OtherDerived = STK::RMatrix; Type_ = double]’
EMmain.cpp:31:15: required from here
/home/rforge/lib/R/3.5/rtkore/projects/Arrays/include/STK_ITContainer.h:192:44: error: passing ‘const STK::RMatrix’ as ‘this’ argument discards qualifiers [-fpermissive]
return this->asDerived().elt2Impl(i,j);
^
In file included from /home/rforge/lib/R/3.5/rtkore/include/RTKpp.h:44,
from EMmain.cpp:1:
/home/rforge/lib/R/3.5/rtkore/projects/Rtkpp/include/STK_RMatrix.h:254:18: note: in call to ‘STK::RMatrix::Type& STK::RMatrix::elt2Impl(int, int) [with Type_ = double; STK::RMatrix::Type = double]’
inline Type& elt2Impl(int i, int j) { return (matrix_(i,j));}
^~~~~~~~
make[2]: *** [lassoModels.mk:31: EMmain.o] Error 1
make[2]: Leaving directory '/tmp/RtmpExk3US/Rbuild315a2cb15c52/HDPenReg/src/HDPenReg'
make[1]: *** [Makefile:2: all] Error 2
make[1]: Leaving directory '/tmp/RtmpExk3US/Rbuild315a2cb15c52/HDPenReg/src/HDPenReg'
make: *** [Makevars:38: pkglib] Error 2
ERROR: compilation failed for package ‘HDPenReg’
* removing ‘/tmp/RtmpExk3US/Rinst315a31fc1353/HDPenReg’
-----------------------------------
ERROR: package installation failed
Run time: 129.71 seconds.
