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HDPenReg log file (build_win64)

Wed Sep 26 11:24:14 2018: Building binary for package HDPenReg (SVN revision 179)
using R version 3.5.1 Patched (2018-09-11 r75286) ...

* installing to library 'R:/lib/local/3.5'
* installing *source* package 'HDPenReg' ...
** libs

*** arch - i386
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic -c EMPenModels.cpp -o EMPenModels.o
c:/Rtools/mingw_32/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic -c larsR.cpp -o larsR.o
(cd ./HDPenReg && /usr/bin/make all)
make[1]: Entering directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-i386/HDPenReg'
(/usr/bin/make -f lassoModels.mk)
make[2]: Entering directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-i386/HDPenReg'
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/LassoSolver.cpp -c -o lassoModels/LassoSolver.o
lassoModels/LassoSolver.cpp: In member function 'virtual STK::Real HD::LassoSolver::run(bool)':
lassoModels/LassoSolver.cpp:154:9: warning: unused variable 'cgiter' [-Wunused-variable]
     int cgiter = cgsolver_.run();
         ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/FusedLassoPenalty.cpp -c -o lassoModels/FusedLassoPenalty.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/FusedLassoSolver.cpp -c -o lassoModels/FusedLassoSolver.o
lassoModels/FusedLassoSolver.cpp: In member function 'virtual STK::Real HD::FusedLassoSolver::run(bool)':
lassoModels/FusedLassoSolver.cpp:186:9: warning: unused variable 'cgiter' [-Wunused-variable]
     int cgiter = cgsolver_.run();
         ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/LogisticLassoSolver.cpp -c -o lassoModels/LogisticLassoSolver.o
lassoModels/LogisticLassoSolver.cpp: In member function 'virtual STK::Real HD::LogisticLassoSolver::run(bool)':
lassoModels/LogisticLassoSolver.cpp:148:9: warning: unused variable 'cgiter' [-Wunused-variable]
     int cgiter = cgsolver_.run();
         ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/LogisticFusedLassoSolver.cpp -c -o lassoModels/LogisticFusedLassoSolver.o
lassoModels/LogisticFusedLassoSolver.cpp: In member function 'virtual STK::Real HD::LogisticFusedLassoSolver::run(bool)':
lassoModels/LogisticFusedLassoSolver.cpp:185:9: warning: unused variable 'cgiter' [-Wunused-variable]
     int cgiter = cgsolver_.run();
         ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/CV.cpp -c -o lassoModels/CV.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic EMmain.cpp -c -o EMmain.o
EMmain.cpp: In function 'SEXPREC* EMfusedLassoMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMmain.cpp:117:7: warning: unused variable 'p' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
       ^
EMmain.cpp:117:29: warning: unused variable 'n' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
                             ^
EMmain.cpp: In function 'SEXPREC* EMlogisticLassoMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMmain.cpp:161:8: warning: unused variable 'interceptC' [-Wunused-variable]
   bool interceptC=as(intercept);
        ^
EMmain.cpp: In function 'SEXPREC* EMlogisticFusedLassoMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMmain.cpp:236:8: warning: unused variable 'interceptC' [-Wunused-variable]
   bool interceptC=as(intercept);
        ^
EMmain.cpp:240:7: warning: unused variable 'p' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
       ^
EMmain.cpp:240:29: warning: unused variable 'n' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
                             ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic EMCVmain.cpp -c -o EMCVmain.o
EMCVmain.cpp: In function 'SEXPREC* cvEMfusedLasso2DMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMCVmain.cpp:197:7: warning: unused variable 'p' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
       ^
EMCVmain.cpp:197:29: warning: unused variable 'n' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
                             ^
EMCVmain.cpp: In function 'SEXPREC* cvEMlogisticFusedLasso2DMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMCVmain.cpp:427:8: warning: unused variable 'interceptC' [-Wunused-variable]
   bool interceptC=as(intercept);
        ^
EMCVmain.cpp:432:7: warning: unused variable 'p' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
       ^
EMCVmain.cpp:432:29: warning: unused variable 'n' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
                             ^
c:/Rtools/mingw_32/bin/ar -r lib/libHDPenReg.a lassoModels/LassoSolver.o lassoModels/FusedLassoPenalty.o lassoModels/FusedLassoSolver.o lassoModels/LogisticLassoSolver.o lassoModels/LogisticFusedLassoSolver.o lassoModels/CV.o EMmain.o EMCVmain.o
C:\Rtools\mingw_32\bin\ar.exe: creating lib/libHDPenReg.a
make[2]: Leaving directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-i386/HDPenReg'
(/usr/bin/make -f lars.mk)
make[2]: Entering directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-i386/HDPenReg'
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/Lars.cpp -c -o lars/Lars.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/Path.cpp -c -o lars/Path.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/PathState.cpp -c -o lars/PathState.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/functions.cpp -c -o lars/functions.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/Fusion.cpp -c -o lars/Fusion.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/Cvlars.cpp -c -o lars/Cvlars.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  larsRmain.cpp -c -o larsRmain.o
c:/Rtools/mingw_32/bin/ar -r lib/libHDPenReg.a lars/Lars.o lars/Path.o lars/PathState.o lars/functions.o lars/Fusion.o lars/Cvlars.o larsRmain.o
make[2]: Leaving directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-i386/HDPenReg'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-i386/HDPenReg'
(cd ./HDPenReg && /usr/bin/make clean)
make[1]: Entering directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-i386/HDPenReg'
(rm -f lassoModels/*.o)
(rm -f ./*.o)
(rm -f lars/*.o)
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-i386/HDPenReg'
C:\Rtools\mingw_32\bin\nm.exe: 'pkglib': No such file
c:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o HDPenReg.dll tmp.def EMPenModels.o init.o larsR.o ./HDPenReg/lib/libHDPenReg.a -fopenmp -LR:/lib/R/R-patched/bin/i386 -lRlapack -LR:/lib/R/R-patched/bin/i386 -lRblas -lgfortran -lm -lquadmath -LR:/base/local215/lib/i386 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/i386 -lR
installing to R:/lib/local/3.5/HDPenReg/libs/i386

*** arch - x64
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic -c EMPenModels.cpp -o EMPenModels.o
c:/Rtools/mingw_64/bin/gcc  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic -c larsR.cpp -o larsR.o
(cd ./HDPenReg && /usr/bin/make all)
make[1]: Entering directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-x64/HDPenReg'
(/usr/bin/make -f lassoModels.mk)
make[2]: Entering directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-x64/HDPenReg'
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/LassoSolver.cpp -c -o lassoModels/LassoSolver.o
lassoModels/LassoSolver.cpp: In member function 'virtual STK::Real HD::LassoSolver::run(bool)':
lassoModels/LassoSolver.cpp:154:9: warning: unused variable 'cgiter' [-Wunused-variable]
     int cgiter = cgsolver_.run();
         ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/FusedLassoPenalty.cpp -c -o lassoModels/FusedLassoPenalty.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/FusedLassoSolver.cpp -c -o lassoModels/FusedLassoSolver.o
lassoModels/FusedLassoSolver.cpp: In member function 'virtual STK::Real HD::FusedLassoSolver::run(bool)':
lassoModels/FusedLassoSolver.cpp:186:9: warning: unused variable 'cgiter' [-Wunused-variable]
     int cgiter = cgsolver_.run();
         ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/LogisticLassoSolver.cpp -c -o lassoModels/LogisticLassoSolver.o
lassoModels/LogisticLassoSolver.cpp: In member function 'virtual STK::Real HD::LogisticLassoSolver::run(bool)':
lassoModels/LogisticLassoSolver.cpp:148:9: warning: unused variable 'cgiter' [-Wunused-variable]
     int cgiter = cgsolver_.run();
         ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/LogisticFusedLassoSolver.cpp -c -o lassoModels/LogisticFusedLassoSolver.o
lassoModels/LogisticFusedLassoSolver.cpp: In member function 'virtual STK::Real HD::LogisticFusedLassoSolver::run(bool)':
lassoModels/LogisticFusedLassoSolver.cpp:185:9: warning: unused variable 'cgiter' [-Wunused-variable]
     int cgiter = cgsolver_.run();
         ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic lassoModels/CV.cpp -c -o lassoModels/CV.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic EMmain.cpp -c -o EMmain.o
EMmain.cpp: In function 'SEXPREC* EMfusedLassoMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMmain.cpp:117:7: warning: unused variable 'p' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
       ^
EMmain.cpp:117:29: warning: unused variable 'n' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
                             ^
EMmain.cpp: In function 'SEXPREC* EMlogisticLassoMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMmain.cpp:161:8: warning: unused variable 'interceptC' [-Wunused-variable]
   bool interceptC=as(intercept);
        ^
EMmain.cpp: In function 'SEXPREC* EMlogisticFusedLassoMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMmain.cpp:236:8: warning: unused variable 'interceptC' [-Wunused-variable]
   bool interceptC=as(intercept);
        ^
EMmain.cpp:240:7: warning: unused variable 'p' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
       ^
EMmain.cpp:240:29: warning: unused variable 'n' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
                             ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include"   `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic EMCVmain.cpp -c -o EMCVmain.o
EMCVmain.cpp: In function 'SEXPREC* cvEMfusedLasso2DMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMCVmain.cpp:197:7: warning: unused variable 'p' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
       ^
EMCVmain.cpp:197:29: warning: unused variable 'n' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
                             ^
EMCVmain.cpp: In function 'SEXPREC* cvEMlogisticFusedLasso2DMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
EMCVmain.cpp:427:8: warning: unused variable 'interceptC' [-Wunused-variable]
   bool interceptC=as(intercept);
        ^
EMCVmain.cpp:432:7: warning: unused variable 'p' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
       ^
EMCVmain.cpp:432:29: warning: unused variable 'n' [-Wunused-variable]
   int p = dataC.sizeCols(), n = dataC.sizeRows();
                             ^
c:/Rtools/mingw_64/bin/ar -r lib/libHDPenReg.a lassoModels/LassoSolver.o lassoModels/FusedLassoPenalty.o lassoModels/FusedLassoSolver.o lassoModels/LogisticLassoSolver.o lassoModels/LogisticFusedLassoSolver.o lassoModels/CV.o EMmain.o EMCVmain.o
C:\Rtools\mingw_64\bin\ar.exe: creating lib/libHDPenReg.a
make[2]: Leaving directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-x64/HDPenReg'
(/usr/bin/make -f lars.mk)
make[2]: Entering directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-x64/HDPenReg'
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/Lars.cpp -c -o lars/Lars.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/Path.cpp -c -o lars/Path.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/PathState.cpp -c -o lars/PathState.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/functions.cpp -c -o lars/functions.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/Fusion.cpp -c -o lars/Fusion.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  lars/Cvlars.cpp -c -o lars/Cvlars.o
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CppFlags()"` -I"R:/lib/local/3.5/rtkore/include" -I"R:/lib/local/3.5/Rcpp/include"   -I"R:/base/local215/include" -DSTKBASEARRAYS=1  `R:/lib/R/R-patched/bin/Rscript -e "rtkore:::CxxFlags()"`   -O2 -Wall  -mtune=generic  larsRmain.cpp -c -o larsRmain.o
c:/Rtools/mingw_64/bin/ar -r lib/libHDPenReg.a lars/Lars.o lars/Path.o lars/PathState.o lars/functions.o lars/Fusion.o lars/Cvlars.o larsRmain.o
make[2]: Leaving directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-x64/HDPenReg'
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-x64/HDPenReg'
(cd ./HDPenReg && /usr/bin/make clean)
make[1]: Entering directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-x64/HDPenReg'
(rm -f lassoModels/*.o)
(rm -f ./*.o)
(rm -f lars/*.o)
make[1]: Leaving directory `/cygdrive/r/tmp/RtmpKIIOya/R.INSTALLde8e3e688f/HDPenReg/src-x64/HDPenReg'
C:\Rtools\mingw_64\bin\nm.exe: 'pkglib': No such file
c:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o HDPenReg.dll tmp.def EMPenModels.o init.o larsR.o ./HDPenReg/lib/libHDPenReg.a -fopenmp -LR:/lib/R/R-patched/bin/x64 -lRlapack -LR:/lib/R/R-patched/bin/x64 -lRblas -lgfortran -lm -lquadmath -LR:/base/local215/lib/x64 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/3.5/HDPenReg/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HDPenReg'
    finding HTML links ... done
    EMcvfusedlasso                          html  
    EMcvlasso                               html  
    EMfusedlasso                            html  
    EMlasso                                 html  
    HDPenReg-package                        html  
    HDcvlars                                html  
    HDfusion                                html  
    HDlars                                  html  
    LarsPath-class                          html  
    coef.LarsPath                           html  
    coeff                                   html  
    computeCoefficients                     html  
    listToMatrix                            html  
    plot-methods                            html  
    plot.HDcvlars                           html  
    plotCoefficient                         html  
    predict.LarsPath                        html  
    simul                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* MD5 sums
packaged installation of 'HDPenReg' as HDPenReg_0.93.2.zip
* DONE (HDPenReg)
In R CMD INSTALL
Run time: 497.34 seconds.
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge