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Contributed R Packages

Below is a list of all packages provided by project photonics.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, use the package sources (.tar.gz) in older versions of R. All packages are built/checked according to this schedule.

  arrays - experiments on 2D arrays  
 

data and functions


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("arrays", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-02-01 13:16:35+01 | Rev.: 389

 
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  baptMisc - Various utility functions (formerly in package constants)  
 

peak(s) finding, numerical zeros(s), export to ascii, markdown, SVD inversion, confidence intervals, ellipses,...


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("baptMisc", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-11-11 11:57:57+01 | Rev.: 481

 
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  cda - Coupled dipole model  
 

full DDA with direct matrix inversion (slow), scatteringR Suggests: spectra


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("cda", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-01-09 21:54:17+01 | Rev.: 384

 
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  constants - Defines some physical constants and functions commonly used in optics, plasmonics.  
 

Constants is a data frame with some physical constants, plus units and name in comment. Gold, silver and glass permittivities, together with spline interpolation functions. luxpop data for other compounds. N and k / epsilon conversion both ways. energy/ wavelength conversion. Fano and Lorentzian functions.


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("constants", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-04-21 01:31:49+02 | Rev.: 447

 
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  ebeamR - Creates position lists for e-beam lithography  
 

Ordered or disordered copies of a single particle shape (polygon), with arbitrary rotations. Sug: baptMisc, spatstat


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("ebeamR", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-01-02 23:27:00+01 | Rev.: 383

 
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  EricksenLeslie - numerical solution of Ericsken-Leslie equations for 1D liquid crystal cells  
 

A 1D finite volume model of the Ericksen-Leslie equations for nematic liquid crytsals. Includes pressure driven flow, flexoelectricity, ion drift-diffusion equations.


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("EricksenLeslie", repos="http://R-Forge.R-project.org")

Version: 0.11 | Last change: 2009-10-28 18:25:29+01 | Rev.: 478

 
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  mie - Scattering related functions  
 

Mie scattering for a sphere and a coated sphere.


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("mie", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-04-21 01:31:49+02 | Rev.: 447

 
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  scatteringR - Scattering related functions  
 

Mie scattering for a sphere and a coated sphere. Wrapper for ADDA (Discrete Dipole Approximation code), Null-Field Method (T-matrix), coupled dipole approximation, MLWA, and several utilities. Suggests: baptMisc, constants, reshape, plyr, lattice


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("scatteringR", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-04-21 01:31:49+02 | Rev.: 447

 
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  Sparameters - computes effective medium parameters from S matrix  
 

computes effective medium from S parameters


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("Sparameters", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-01-02 23:27:00+01 | Rev.: 383

 
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  spectra - Spectra creation and manipulation  
 

Defines the creation and manipulation of objects of class spectra. These contain several slots: wavelength, signal(s), label(s), comments. Suggests: baptMisc, constants, ggplot2, lattice,reshape


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("spectra", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-10-06 23:57:49+02 | Rev.: 467

 
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  spectral - Convert a spectrum to RGB  
 

Converts a spectrum (intensity vs wavelength) to RGB values


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("spectral", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-10-07 18:15:59+02 | Rev.: 475

 
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  spectroR - Spectroscopy data analysis  
 

reshape data from the spectrometer, background correction, and spectra extraction Suggests: baptMisc, PROcess


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("spectroR", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-03-21 20:31:06+01 | Rev.: 425

 
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  SPPr - Surface Plasmon Polaritons excitation in (multilayered) Kretschmann geometry  
 

Provides a modelling of multilayer reflection (transmission) coefficient, convenient functions to reshape experimental data, plot it against the model and fit.


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("SPPr", repos="http://R-Forge.R-project.org")

Version: 1.0 | Last change: 2009-10-15 23:05:07+02 | Rev.: 477

 
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  uniaxialOptics - Modelling multilayer anisotropic stacks  
 

Computes transmission and/or reflection through a 1D optical uniaxial stack, such as a liquid crystal cell. Available methods: Ko variant of Berremans 4x4 Matrix Method, Lien variant of Extended Jones Method


Download:   Package source (.tar.gz) | Windows binary (.zip) | MacOS X leopard binary (.tgz)

To install this package directly within R type: install.packages("uniaxialOptics", repos="http://R-Forge.R-project.org")

Version: 0.1 | Last change: 2009-04-14 21:06:12+02 | Rev.: 446

 
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