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Rcpp log file (build_src)

Mon Nov 25 12:19:29 2013: Building tarball for package Rcpp (SVN revision 4600)
using R version 3.0.2 Patched (2013-11-22 r64286) ...

* checking for file ‘Rcpp/DESCRIPTION’ ... OK
* preparing ‘Rcpp’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX ...
Creating pdf output from LaTeX ...

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