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geoRExtended log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2012-08-10-16-03/RF_PKG_CHECK/PKGS/geoRExtended.Rcheck'
* using R version 2.15.1 Patched (2012-08-16 r60282)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'geoRExtended/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'geoRExtended' version '1.0.2'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Jason Lessels '
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking whether package 'geoRExtended' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
likfit.nospatial: no visible binding for global variable
  '.proflik.lambda'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'BCtransform' 'backtransform.moments' 'boxcox.geodata' 'boxcoxfit'
  'coords.aniso' 'cov.spatial' 'dboxcox' 'dinvchisq' 'fitted.likGRF'
  'geoRCovModels' 'legend.krige' 'likfit' 'likfit.limits'
  'likfit.nospatial' 'lines.boxcoxfit' 'locations.inside'
  'logLik.likGRF' 'loglik.GRF' 'loglik.spatial' 'matern' 'pars.limits'
  'plot.1d' 'plot.boxcoxfit' 'polygrid' 'practicalRange' 'pred_grid'
  'print.boxcoxfit' 'print.likGRF' 'print.summary.likGRF' 'rboxcox'
  'resid.likGRF' 'residuals.likGRF' 'rinvchisq' 'set.coords.lims'
  'summary.likGRF' 'trend.spatial' 'varcov.spatial'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Objects in \usage without \alias in documentation object 'likfitRcpp':
  'likfit' 'fitted.likGRF' 'resid.likGRF'

Documented arguments not in \usage in documentation object 'likfitSANN':
  'object' 'spatial'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
NOTE: There were 2 notes.
See
  'R:/run/building/build_2012-08-10-16-03/RF_PKG_CHECK/PKGS/geoRExtended.Rcheck/00check.log'
for details.

Run time: 133.58 seconds.