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batman log file (build_win64)

Fri Jan 26 07:52:50 2018: Building binary for package batman (SVN revision 408)
using R version 3.4.3 Patched (2018-01-24 r74157) ...

* installing to library 'R:/lib/local/3.4'
* installing *source* package 'batman' ...
** libs

*** arch - i386
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c Lrow.cpp -o Lrow.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c MMdif.cpp -o MMdif.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c MVprod.cpp -o MVprod.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c MVprodL.cpp -o MVprodL.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c MVprodrange.cpp -o MVprodrange.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c Msq.cpp -o Msq.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c VSdiv.cpp -o VSdiv.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c VVdivdot.cpp -o VVdivdot.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c VVprod.cpp -o VVprod.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c VVproddot.cpp -o VVproddot.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c VVsum.cpp -o VVsum.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c Vconstprod.cpp -o Vconstprod.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c Vpartassign.cpp -o Vpartassign.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c Vpow.cpp -o Vpow.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c adapt_shape.cpp -o adapt_shape.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c assign_ind.cpp -o assign_ind.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c calculate_metropolis_ratio_beta_theta.cpp -o calculate_metropolis_ratio_beta_theta.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c calculate_metropolis_ratio_eta_beta_theta.cpp -o calculate_metropolis_ratio_eta_beta_theta.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c calculate_metropolis_ratio_eta_local.cpp -o calculate_metropolis_ratio_eta_local.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c calculate_metropolis_ratio_eta_theta.cpp -o calculate_metropolis_ratio_eta_theta.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c datamod.cpp -o datamod.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c deltaadapt.cpp -o deltaadapt.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c dwt.cpp -o dwt.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c gibbs_sample_beta.cpp -o gibbs_sample_beta.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c gibbs_sample_lambda_scale_free.cpp -o gibbs_sample_lambda_scale_free.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c gibbs_sample_psi.cpp -o gibbs_sample_psi.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c gibbs_sample_tau_scale_free.cpp -o gibbs_sample_tau_scale_free.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c gibbs_sample_theta.cpp -o gibbs_sample_theta.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c lorentzian.cpp -o lorentzian.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_betapdf.cpp -o my_betapdf.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_erfcinv.cpp -o my_erfcinv.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_erfcx.cpp -o my_erfcx.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_exprnd.cpp -o my_exprnd.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_gamrnd.cpp -o my_gamrnd.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_isinf.cpp -o my_isinf.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_normcdf.cpp -o my_normcdf.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_norminv.cpp -o my_norminv.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_normrnd.cpp -o my_normrnd.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_rand.cpp -o my_rand.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_tcdf.cpp -o my_tcdf.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_tinv.cpp -o my_tinv.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_tpdf.cpp -o my_tpdf.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c my_unifrnd.cpp -o my_unifrnd.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c mynchoosek.cpp -o mynchoosek.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c normlogpdf.cpp -o normlogpdf.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c ppm_ranges.cpp -o ppm_ranges.o
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c read_dat_chemshift.cpp -o read_dat_chemshift.o
read_dat_chemshift.cpp: In function 'int read_dat_chemshift(std::vector >*, matrix*, matrix*, char*, int)':
read_dat_chemshift.cpp:33:19: warning: unused variable 'tp' [-Wunused-variable]
             char *tp = fgets(buffer, 10000, fp);
                   ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c read_datf.cpp -o read_datf.o
read_datf.cpp: In function 'int read_datf(std::vector >*, matrix*, matrix*, matrix*, matrix*, matrix*, matrix*, matrixI*, char*)':
read_datf.cpp:34:13: warning: unused variable 'tp0' [-Wunused-variable]
       char *tp0 = fgets(buffer, 3000, fp);
             ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c read_multiplet_data.cpp -o read_multiplet_data.o
read_multiplet_data.cpp: In function 'int read_multiplet_data(int, char*, opt*, std::vector >*, std::vector*, std::vector*, char*, int, char*)':
read_multiplet_data.cpp:52:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (unsigned int j = 0; j < nl2; j++)
                              ^
read_multiplet_data.cpp:269:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
c:/Rtools/mingw_32/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c read_txt_batmanoptions.cpp -o read_txt_batmanoptions.o
read_txt_batmanoptions.cpp: In function 'void read_txt_batmanoptions(opt*, char*)':
read_txt_batmanoptions.cpp:20:19: warning: unused variable 'tp0' [-Wunused-variable]
             char *tp0 = fgets(buffer, 1000, fp);
                   ^
read_txt_batmanoptions.cpp:33:19: warning: unused variable 'tp0' [-Wunused-variable]
             char *tp0 = fgets(buffer, 1000, fp);
                   ^
read_txt_batmanoptions.cpp:154:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         while (s[lind].size() > j2)
                               ^
read_txt_batmanoptions.cpp:169:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         while (s[lind].size() > j2)
                               ^
read_txt_batmanoptions.cpp:196:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int m = 0; m  >*, matrix*, matrix*, char*, int)':
read_dat_chemshift.cpp:33:19: warning: unused variable 'tp' [-Wunused-variable]
             char *tp = fgets(buffer, 10000, fp);
                   ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c read_datf.cpp -o read_datf.o
read_datf.cpp: In function 'int read_datf(std::vector >*, matrix*, matrix*, matrix*, matrix*, matrix*, matrix*, matrixI*, char*)':
read_datf.cpp:34:13: warning: unused variable 'tp0' [-Wunused-variable]
       char *tp0 = fgets(buffer, 3000, fp);
             ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c read_multiplet_data.cpp -o read_multiplet_data.o
read_multiplet_data.cpp: In function 'int read_multiplet_data(int, char*, opt*, std::vector >*, std::vector*, std::vector*, char*, int, char*)':
read_multiplet_data.cpp:52:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (unsigned int j = 0; j < nl2; j++)
                              ^
read_multiplet_data.cpp:269:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
c:/Rtools/mingw_64/bin/g++  -I"R:/lib/R/R-patched/include" -DNDEBUG     -I"R:/base/local215/include"  -IboostLib    -O2 -Wall  -mtune=generic -c read_txt_batmanoptions.cpp -o read_txt_batmanoptions.o
read_txt_batmanoptions.cpp: In function 'void read_txt_batmanoptions(opt*, char*)':
read_txt_batmanoptions.cpp:20:19: warning: unused variable 'tp0' [-Wunused-variable]
             char *tp0 = fgets(buffer, 1000, fp);
                   ^
read_txt_batmanoptions.cpp:33:19: warning: unused variable 'tp0' [-Wunused-variable]
             char *tp0 = fgets(buffer, 1000, fp);
                   ^
read_txt_batmanoptions.cpp:154:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         while (s[lind].size() > j2)
                               ^
read_txt_batmanoptions.cpp:169:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         while (s[lind].size() > j2)
                               ^
read_txt_batmanoptions.cpp:196:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (int m = 0; m